RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065018751	Gene ID		Accession	-
Symbol	RPL35	Alias	-	Full Name	60S ribosomal protein L35
Status	Confidence	Length	8762 bases	Strand	Plus strand
Position	LUXW01024905.1 : 619657 - 628418	RNA binding domain	Ribosomal_L29
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065010165	Ribosomal_L29	PF00831	8.4e-20	1
ENSSSCP00065010172	Ribosomal_L29	PF00831	8.4e-20	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPL35-201	ENSSSCT00065024912	3500	123aa	ENSSSCP00065010165
RPL35-202	ENSSSCT00065024921	1038	123aa	ENSSSCP00065010172

Gene Model

Click here to download ENSSSCG00065018751's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065018751's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065028249	5.85938	3.51562	sus_scrofa_berkshire	ENSSSCP00065010165	36.5854	21.9512
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065021230	6.78788	4.12121	sus_scrofa_berkshire	ENSSSCP00065010165	45.5285	27.6423

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	99.187	99.187	sus_scrofa	ENSSSCP00000063069	99.187	99.187
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	100	100	sus_scrofa_usmarc	ENSSSCP00070027515	100	100
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	89.4309	89.4309	sus_scrofa_wuzhishan	ENSSSCP00005019832	99.0991	99.0991
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	100	100	sus_scrofa_jinhua	ENSSSCP00060047267	100	100
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	100	100	sus_scrofa_pietrain	ENSSSCP00055043713	100	100
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	100	100	sus_scrofa_tibetan	ENSSSCP00015019093	100	100
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	68.2927	63.4146	sus_scrofa_hampshire	ENSSSCP00035042384	51.2195	47.561
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	99.187	99.187	sus_scrofa_meishan	ENSSSCP00040001074	98.3871	98.3871
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	75.6098	70.7317	equus_caballus	ENSECAP00000000759	80.8696	75.6522
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	100	99.187	ovis_aries_rambouillet	ENSOARP00020010812	100	99.187
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	100	100	sus_scrofa_largewhite	ENSSSCP00025017990	100	100
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	100	100	sus_scrofa_rongchang	ENSSSCP00030029788	100	100
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	100	100	sus_scrofa_landrace	ENSSSCP00045041258	100	100
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	99.187	98.374	bos_taurus	ENSBTAP00000070645	76.7296	76.1006
ENSSSCG00065018751	sus_scrofa_berkshire	ENSSSCP00065010165	99.187	97.561	bos_taurus	ENSBTAP00000051069	99.187	97.561

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression