RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSSSCG00065018180 | Gene ID |
|
Accession |
- |
Symbol |
LSM4 |
Alias |
- |
Full Name |
NA |
Status |
Confidence |
Length |
17678 bases |
Strand |
Minus strand |
Position |
LUXW01007133.1 : 2120372 - 2138049 |
RNA binding domain |
LSM |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSSSCP00065009869 |
LSM |
PF01423 |
3e-16 |
1 |
ENSSSCP00065009871 |
LSM |
PF01423 |
1.5e-13 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
LSM4-201 |
ENSSSCT00065024168 |
7044 |
194aa |
ENSSSCP00065009869 |
LSM4-202 |
ENSSSCT00065024171 |
1130 |
125aa |
ENSSSCP00065009871 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065007565 | 37.8151 | 21.0084 | sus_scrofa_berkshire | ENSSSCP00065009869 | 23.1959 | 12.8866 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065012551 | 11.3636 | 6.40496 | sus_scrofa_berkshire | ENSSSCP00065009869 | 28.3505 | 15.9794 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 60.3093 | 59.2784 | sus_scrofa | ENSSSCP00000080966 | 84.1727 | 82.7338 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 100 | 100 | sus_scrofa_usmarc | ENSSSCP00070024880 | 100 | 100 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 100 | 100 | sus_scrofa_jinhua | ENSSSCP00060020246 | 100 | 100 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 100 | 100 | sus_scrofa_pietrain | ENSSSCP00055036831 | 100 | 100 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 100 | 100 | sus_scrofa_tibetan | ENSSSCP00015031365 | 100 | 100 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 100 | 100 | sus_scrofa_hampshire | ENSSSCP00035033762 | 100 | 100 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 100 | 100 | sus_scrofa_meishan | ENSSSCP00040032067 | 100 | 100 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 44.8454 | 36.0825 | equus_caballus | ENSECAP00000087319 | 28.1553 | 22.6537 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 60.3093 | 59.2784 | ovis_aries_rambouillet | ENSOARP00020006086 | 84.1727 | 82.7338 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 100 | 100 | sus_scrofa_largewhite | ENSSSCP00025022373 | 100 | 100 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 100 | 100 | sus_scrofa_rongchang | ENSSSCP00030037160 | 100 | 100 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 100 | 100 | sus_scrofa_landrace | ENSSSCP00045027695 | 100 | 100 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 100 | 100 | sus_scrofa_bamei | ENSSSCP00050044719 | 100 | 100 |
ENSSSCG00065018180 | sus_scrofa_berkshire | ENSSSCP00065009869 | 59.7938 | 58.7629 | bos_taurus | ENSBTAP00000011312 | 83.4532 | 82.0144 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |