RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065017781	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	20032 bases	Strand	Minus strand
Position	LUXW01030620.1 : 26108 - 46139	RNA binding domain	HA2 , OB_NTP_bind
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065009614	HA2	PF04408	1.2e-19	1
ENSSSCP00065009614	OB_NTP_bind	PF07717	1.9e-17	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065023620	4681	646aa	ENSSSCP00065009614
-	ENSSSCT00065023629	6657	355aa	ENSSSCP00065009619

Gene Model

Click here to download ENSSSCG00065017781's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065017781's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065045272	40.8907	23.6167	sus_scrofa_berkshire	ENSSSCP00065009614	46.904	27.0898
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065006585	13.716	7.19844	sus_scrofa_berkshire	ENSSSCP00065009614	21.8266	11.4551
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065035950	20.8783	12.599	sus_scrofa_berkshire	ENSSSCP00065009614	44.8916	27.0898
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065033254	28.6561	18.3794	sus_scrofa_berkshire	ENSSSCP00065009614	44.8916	28.7926
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065035308	44.5443	29.525	sus_scrofa_berkshire	ENSSSCP00065009614	53.7152	35.6037
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065002254	22.9984	14.2857	sus_scrofa_berkshire	ENSSSCP00065009614	45.356	28.1734
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009339	55.4765	38.1223	sus_scrofa_berkshire	ENSSSCP00065009614	60.3715	41.4861
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065031844	37.0056	26.177	sus_scrofa_berkshire	ENSSSCP00065009614	60.8359	43.0341
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065000152	25.6281	14.8241	sus_scrofa_berkshire	ENSSSCP00065009614	47.3684	27.3994
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065034782	29.7927	20.0345	sus_scrofa_berkshire	ENSSSCP00065009614	53.4056	35.9133
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065018010	31.8663	21.5974	sus_scrofa_berkshire	ENSSSCP00065009614	60.5263	41.0217
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065023025	46.4151	32.0755	sus_scrofa_berkshire	ENSSSCP00065009614	57.1207	39.4737
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065032842	40.8078	23.8162	sus_scrofa_berkshire	ENSSSCP00065009614	45.356	26.4706
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009108	13.1677	8.57143	sus_scrofa_berkshire	ENSSSCP00065009614	16.4087	10.6811
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065041977	33.3333	24.0924	sus_scrofa_berkshire	ENSSSCP00065009614	62.5387	45.2012
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065016609	22.7672	13.5432	sus_scrofa_berkshire	ENSSSCP00065009614	48.1424	28.6378
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065006176	22.6164	13.3777	sus_scrofa_berkshire	ENSSSCP00065009614	47.3684	28.0186
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065004959	27.5742	18.3246	sus_scrofa_berkshire	ENSSSCP00065009614	48.9164	32.5077

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	99.6904	99.3808	sus_scrofa	ENSSSCP00000052770	91.7379	91.453
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	95.6656	95.2012	sus_scrofa_usmarc	ENSSSCP00070030599	87.909	87.4822
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	99.8452	99.6904	sus_scrofa_wuzhishan	ENSSSCP00005037672	91.7496	91.6074
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	88.5449	86.5325	sus_scrofa_jinhua	ENSSSCP00060042684	81.4815	79.6296
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	99.6904	99.3808	sus_scrofa_pietrain	ENSSSCP00055021938	99.6904	99.3808
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	99.6904	99.3808	sus_scrofa_hampshire	ENSSSCP00035030034	99.6904	99.3808
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	88.5449	86.5325	sus_scrofa_meishan	ENSSSCP00040023539	81.4815	79.6296
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	95.2012	89.4737	equus_caballus	ENSECAP00000058540	84.9447	79.8343
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	96.2848	91.1765	ovis_aries_rambouillet	ENSOARP00020013405	88.227	83.5461
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	88.2353	86.0681	sus_scrofa_largewhite	ENSSSCP00025032159	81.1966	79.2023
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	88.5449	86.5325	sus_scrofa_rongchang	ENSSSCP00030006397	81.4815	79.6296
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	99.8452	99.5356	sus_scrofa_landrace	ENSSSCP00045001417	99.8452	99.5356
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	88.3901	86.3777	sus_scrofa_bamei	ENSSSCP00050030168	81.339	79.4872
ENSSSCG00065017781	sus_scrofa_berkshire	ENSSSCP00065009614	95.6656	90.0929	bos_taurus	ENSBTAP00000016932	87.6596	82.5532

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression