RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065017279	Gene ID		Accession	-
Symbol	DHX35	Alias	-	Full Name	NA
Status	Confidence	Length	78229 bases	Strand	Plus strand
Position	LUXW01043520.1 : 426575 - 504803	RNA binding domain	HA2 , OB_NTP_bind
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065009348	HA2	PF04408	2e-19	1
ENSSSCP00065009348	OB_NTP_bind	PF07717	3e-19	2
ENSSSCP00065009346	HA2	PF04408	2e-19	1
ENSSSCP00065009346	OB_NTP_bind	PF07717	3.9e-07	2
ENSSSCP00065009352	HA2	PF04408	2.1e-19	1
ENSSSCP00065009352	OB_NTP_bind	PF07717	3.1e-19	2
ENSSSCP00065009339	HA2	PF04408	2.2e-19	1
ENSSSCP00065009339	OB_NTP_bind	PF07717	3.3e-19	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
DHX35-201	ENSSSCT00065022974	3365	703aa	ENSSSCP00065009339
DHX35-202	ENSSSCT00065022984	3293	679aa	ENSSSCP00065009346
DHX35-203	ENSSSCT00065022991	3272	672aa	ENSSSCP00065009348
DHX35-204	ENSSSCT00065022997	3210	668aa	ENSSSCP00065009352

Gene Model

Click here to download ENSSSCG00065017279's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065017279's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065045272	47.5034	26.7206	sus_scrofa_berkshire	ENSSSCP00065009339	50.0711	28.165
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065006585	16.3424	9.04669	sus_scrofa_berkshire	ENSSSCP00065009339	23.8976	13.229
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065035950	22.3182	12.527	sus_scrofa_berkshire	ENSSSCP00065009339	44.0967	24.7511
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065033254	34.7826	20.4545	sus_scrofa_berkshire	ENSSSCP00065009339	50.0711	29.4452
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065035308	51.9897	31.9641	sus_scrofa_berkshire	ENSSSCP00065009339	57.6102	35.4196
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065002254	26.2951	15.5416	sus_scrofa_berkshire	ENSSSCP00065009339	47.6529	28.165
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065031844	42.7495	30.0377	sus_scrofa_berkshire	ENSSSCP00065009339	64.5804	45.377
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065000152	28.392	16.5829	sus_scrofa_berkshire	ENSSSCP00065009339	48.2219	28.165
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065034782	33.247	22.1934	sus_scrofa_berkshire	ENSSSCP00065009339	54.7653	36.5576
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065018010	35.9413	24.3684	sus_scrofa_berkshire	ENSSSCP00065009339	62.7312	42.532
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065023025	56.6038	37.9874	sus_scrofa_berkshire	ENSSSCP00065009339	64.0114	42.9587
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065032842	45.961	28.4123	sus_scrofa_berkshire	ENSSSCP00065009339	46.9417	29.0185
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009108	18.0124	11.8012	sus_scrofa_berkshire	ENSSSCP00065009339	20.6259	13.5135
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065041977	39.769	28.1353	sus_scrofa_berkshire	ENSSSCP00065009339	68.5633	48.5064
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009614	60.3715	41.4861	sus_scrofa_berkshire	ENSSSCP00065009339	55.4765	38.1223
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065016609	26.0615	15.5198	sus_scrofa_berkshire	ENSSSCP00065009339	50.6401	30.1565
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065006176	25.425	15.0037	sus_scrofa_berkshire	ENSSSCP00065009339	48.9331	28.8762
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065004959	30.4538	18.2373	sus_scrofa_berkshire	ENSSSCP00065009339	49.6444	29.7297

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	100	100	sus_scrofa	ENSSSCP00000051779	100	100
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	99.8577	99.7155	sus_scrofa_usmarc	ENSSSCP00070017553	99.8577	99.7155
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	98.1508	98.1508	sus_scrofa_wuzhishan	ENSSSCP00005029645	98.5714	98.5714
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	98.0085	98.0085	sus_scrofa_jinhua	ENSSSCP00060036857	100	100
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	100	100	sus_scrofa_pietrain	ENSSSCP00055026293	100	100
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	100	100	sus_scrofa_tibetan	ENSSSCP00015045333	100	100
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	100	100	sus_scrofa_hampshire	ENSSSCP00035033371	100	100
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	97.2973	97.1551	sus_scrofa_meishan	ENSSSCP00040022039	99.7085	99.5627
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	98.1508	96.7283	equus_caballus	ENSECAP00000030130	96.3687	94.9721
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	99.431	98.5775	ovis_aries_rambouillet	ENSOARP00020016499	99.431	98.5775
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	98.862	98.293	sus_scrofa_largewhite	ENSSSCP00025012940	94.9454	94.3989
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	98.862	98.293	sus_scrofa_rongchang	ENSSSCP00030007848	94.9454	94.3989
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	98.862	98.293	sus_scrofa_landrace	ENSSSCP00045019631	94.9454	94.3989
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	98.862	98.293	sus_scrofa_bamei	ENSSSCP00050009384	94.9454	94.3989
ENSSSCG00065017279	sus_scrofa_berkshire	ENSSSCP00065009339	98.293	97.0128	bos_taurus	ENSBTAP00000071571	94.7874	93.5528

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression