RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065016511	Gene ID		Accession	-
Symbol	NOP58	Alias	-	Full Name	NA
Status	Confidence	Length	79959 bases	Strand	Plus strand
Position	LUXW01032369.1 : 622216 - 702174	RNA binding domain	Nop , NOP5NT
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065008942	Nop	PF01798	1.9e-81	1
ENSSSCP00065008942	NOP5NT	PF08156	3.7e-13	2
ENSSSCP00065008928	Nop	PF01798	2e-81	1
ENSSSCP00065008928	NOP5NT	PF08156	1.5e-23	2
ENSSSCP00065008936	Nop	PF01798	3e-81	1
ENSSSCP00065008947	Nop	PF01798	3.5e-81	1
ENSSSCP00065008916	Nop	PF01798	4e-81	1
ENSSSCP00065008916	NOP5NT	PF08156	4.6e-23	2
ENSSSCP00065008923	Nop	PF01798	4e-81	1
ENSSSCP00065008923	NOP5NT	PF08156	4.7e-23	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
NOP58-201	ENSSSCT00065021974	3740	546aa	ENSSSCP00065008916
NOP58-202	ENSSSCT00065021985	4061	547aa	ENSSSCP00065008923
NOP58-203	ENSSSCT00065022003	5418	513aa	ENSSSCP00065008928
NOP58-204	ENSSSCT00065022019	1950	483aa	ENSSSCP00065008936
NOP58-205	ENSSSCT00065022027	5191	500aa	ENSSSCP00065008942
NOP58-206	ENSSSCT00065022035	2071	512aa	ENSSSCP00065008947

Gene Model

Click here to download ENSSSCG00065016511's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065016511's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065041821	55.3691	37.4161	sus_scrofa_berkshire	ENSSSCP00065008923	60.3291	40.7678

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	98.1718	98.1718	sus_scrofa	ENSSSCP00000051914	100	100
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	93.7843	92.8702	sus_scrofa_usmarc	ENSSSCP00070037868	94.4751	93.5543
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	92.6874	91.7733	sus_scrofa_wuzhishan	ENSSSCP00005008958	94.0631	93.1354
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	95.4296	95.2468	sus_scrofa_jinhua	ENSSSCP00060041529	95.6044	95.4212
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	98.1718	98.1718	sus_scrofa_pietrain	ENSSSCP00055024675	100	100
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	100	100	sus_scrofa_tibetan	ENSSSCP00015038811	100	100
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	95.4296	95.2468	sus_scrofa_hampshire	ENSSSCP00035013411	95.6044	95.4212
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	95.4296	95.2468	sus_scrofa_meishan	ENSSSCP00040048225	95.6044	95.4212
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	95.4296	93.2358	equus_caballus	ENSECAP00000023639	92.8826	90.7473
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	96.3437	95.064	ovis_aries_rambouillet	ENSOARP00020030189	99.2467	97.9284
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	95.4296	95.2468	sus_scrofa_largewhite	ENSSSCP00025007566	95.6044	95.4212
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	95.4296	95.2468	sus_scrofa_rongchang	ENSSSCP00030021106	95.6044	95.4212
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	95.4296	95.2468	sus_scrofa_landrace	ENSSSCP00045039309	95.6044	95.4212
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	95.4296	95.2468	sus_scrofa_bamei	ENSSSCP00050034801	95.6044	95.4212
ENSSSCG00065016511	sus_scrofa_berkshire	ENSSSCP00065008923	95.2468	93.6015	bos_taurus	ENSBTAP00000061048	94.3841	92.7536

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression