RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065013917	Gene ID		Accession	-
Symbol	SNRPD1	Alias	-	Full Name	NA
Status	Confidence	Length	15664 bases	Strand	Minus strand
Position	LUXW01046421.1 : 232526 - 248189	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065007565	LSM	PF01423	1.1e-18	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
SNRPD1-201	ENSSSCT00065018512	4682	119aa	ENSSSCP00065007565

Gene Model

Click here to download ENSSSCG00065013917's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065013917's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065009869	23.1959	12.8866	sus_scrofa_berkshire	ENSSSCP00065007565	37.8151	21.0084
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065012551	12.8099	8.05785	sus_scrofa_berkshire	ENSSSCP00065007565	52.1008	32.7731

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	100	sus_scrofa	ENSSSCP00000004008	100	100
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	100	sus_scrofa_usmarc	ENSSSCP00070043388	100	100
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	100	sus_scrofa_wuzhishan	ENSSSCP00005014102	100	100
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	98.3193	sus_scrofa_jinhua	ENSSSCP00060027782	78.2895	76.9737
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	98.3193	sus_scrofa_pietrain	ENSSSCP00055016498	78.2895	76.9737
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	98.3193	sus_scrofa_tibetan	ENSSSCP00015038723	78.2895	76.9737
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	98.3193	sus_scrofa_hampshire	ENSSSCP00035037868	78.2895	76.9737
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	100	sus_scrofa_meishan	ENSSSCP00040047343	100	100
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	93.2773	93.2773	equus_caballus	ENSECAP00000012062	100	100
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	100	ovis_aries_rambouillet	ENSOARP00020008156	100	100
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	100	sus_scrofa_largewhite	ENSSSCP00025032184	100	100
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	98.3193	sus_scrofa_rongchang	ENSSSCP00030032720	78.2895	76.9737
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	100	sus_scrofa_landrace	ENSSSCP00045035469	100	100
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	98.3193	sus_scrofa_bamei	ENSSSCP00050034048	78.2895	76.9737
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	100	100	bos_taurus	ENSBTAP00000010912	100	100
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	89.916	89.0756	bos_taurus	ENSBTAP00000070701	92.2414	91.3793
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	97.479	96.6387	bos_taurus	ENSBTAP00000055359	97.479	96.6387
ENSSSCG00065013917	sus_scrofa_berkshire	ENSSSCP00065007565	98.3193	96.6387	bos_taurus	ENSBTAP00000050719	87.3134	85.8209

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression