RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSSSCG00065013388 | Gene ID |
|
Accession |
- |
Symbol |
FMR1 |
Alias |
- |
Full Name |
NA |
Status |
Confidence |
Length |
38492 bases |
Strand |
Minus strand |
Position |
LUXW01005063.1 : 1218470 - 1256961 |
RNA binding domain |
Agenet , KH_1 , KH_9 , FXMRP1_C_core |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSSSCP00065007417 |
Agenet |
PF05641 |
5.4e-11 |
1 |
ENSSSCP00065007417 |
KH_1 |
PF00013 |
2.8e-14 |
2 |
ENSSSCP00065007417 |
KH_1 |
PF00013 |
2.8e-14 |
3 |
ENSSSCP00065007417 |
KH_9 |
PF17904 |
3.9e-37 |
4 |
ENSSSCP00065007437 |
Agenet |
PF05641 |
7.4e-11 |
1 |
ENSSSCP00065007437 |
KH_1 |
PF00013 |
1.5e-15 |
2 |
ENSSSCP00065007437 |
KH_1 |
PF00013 |
1.5e-15 |
3 |
ENSSSCP00065007437 |
KH_9 |
PF17904 |
5e-37 |
4 |
ENSSSCP00065007437 |
FXMRP1_C_core |
PF12235 |
3.6e-24 |
5 |
ENSSSCP00065007390 |
Agenet |
PF05641 |
1e-10 |
1 |
ENSSSCP00065007390 |
KH_1 |
PF00013 |
1.9e-15 |
2 |
ENSSSCP00065007390 |
KH_1 |
PF00013 |
1.9e-15 |
3 |
ENSSSCP00065007390 |
KH_9 |
PF17904 |
6.1e-37 |
4 |
ENSSSCP00065007390 |
FXMRP1_C_core |
PF12235 |
7.5e-46 |
5 |
ENSSSCP00065007400 |
Agenet |
PF05641 |
1.1e-10 |
1 |
ENSSSCP00065007400 |
KH_1 |
PF00013 |
1.6e-15 |
2 |
ENSSSCP00065007400 |
KH_1 |
PF00013 |
1.6e-15 |
3 |
ENSSSCP00065007400 |
KH_9 |
PF17904 |
5.9e-37 |
4 |
ENSSSCP00065007400 |
FXMRP1_C_core |
PF12235 |
8.7e-46 |
5 |
ENSSSCP00065007425 |
KH_1 |
PF00013 |
1.4e-15 |
1 |
ENSSSCP00065007425 |
KH_1 |
PF00013 |
1.4e-15 |
2 |
ENSSSCP00065007425 |
KH_9 |
PF17904 |
4.4e-37 |
3 |
ENSSSCP00065007425 |
FXMRP1_C_core |
PF12235 |
2.3e-24 |
4 |
ENSSSCP00065007394 |
KH_1 |
PF00013 |
1.9e-15 |
1 |
ENSSSCP00065007394 |
KH_1 |
PF00013 |
1.9e-15 |
2 |
ENSSSCP00065007394 |
KH_9 |
PF17904 |
6.1e-37 |
3 |
ENSSSCP00065007394 |
FXMRP1_C_core |
PF12235 |
2.7e-46 |
4 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
FMR1-202 |
ENSSSCT00065018091 |
3736 |
611aa |
ENSSSCP00065007390 |
FMR1-201 |
ENSSSCT00065018103 |
3627 |
597aa |
ENSSSCP00065007394 |
FMR1-203 |
ENSSSCT00065018113 |
2536 |
632aa |
ENSSSCP00065007400 |
FMR1-204 |
ENSSSCT00065018151 |
2265 |
537aa |
ENSSSCP00065007417 |
FMR1-205 |
ENSSSCT00065018175 |
2541 |
501aa |
ENSSSCP00065007425 |
FMR1-206 |
ENSSSCT00065018193 |
1827 |
537aa |
ENSSSCP00065007437 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065030149 | 55.5245 | 45.5944 | sus_scrofa_berkshire | ENSSSCP00065007400 | 62.8165 | 51.5823 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065040113 | 62.6292 | 53.4712 | sus_scrofa_berkshire | ENSSSCP00065007400 | 67.0886 | 57.2785 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 100 | 100 | sus_scrofa | ENSSSCP00000030836 | 100 | 100 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 100 | 100 | sus_scrofa_usmarc | ENSSSCP00070006270 | 100 | 100 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 98.1013 | 98.1013 | sus_scrofa_wuzhishan | ENSSSCP00005046340 | 98.2567 | 98.2567 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 96.6772 | 96.6772 | sus_scrofa_jinhua | ENSSSCP00060027046 | 100 | 100 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 96.6772 | 96.6772 | sus_scrofa_pietrain | ENSSSCP00055001589 | 100 | 100 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 96.6772 | 96.6772 | sus_scrofa_tibetan | ENSSSCP00015017480 | 100 | 100 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 96.6772 | 96.6772 | sus_scrofa_hampshire | ENSSSCP00035031726 | 100 | 100 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 94.462 | 94.462 | sus_scrofa_meishan | ENSSSCP00040027987 | 100 | 100 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 99.3671 | 99.0506 | equus_caballus | ENSECAP00000046691 | 99.3671 | 99.0506 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 91.7721 | 87.3418 | ovis_aries_rambouillet | ENSOARP00020012451 | 79.8898 | 76.0331 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 96.6772 | 96.6772 | sus_scrofa_largewhite | ENSSSCP00025040544 | 100 | 100 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 100 | 100 | sus_scrofa_rongchang | ENSSSCP00030001010 | 100 | 100 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 96.6772 | 96.6772 | sus_scrofa_landrace | ENSSSCP00045004079 | 100 | 100 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 100 | 100 | sus_scrofa_bamei | ENSSSCP00050043355 | 100 | 100 |
ENSSSCG00065013388 | sus_scrofa_berkshire | ENSSSCP00065007400 | 99.2089 | 97.3101 | bos_taurus | ENSBTAP00000058546 | 99.2089 | 97.3101 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |