RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065011372	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	78202 bases	Strand	Plus strand
Position	LUXW01010987.1 : 453781 - 531982	RNA binding domain	DEAD , HA2 , YTH , OB_NTP_bind
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065006176	DEAD	PF00270	2.2e-09	1
ENSSSCP00065006176	HA2	PF04408	5.6e-18	2
ENSSSCP00065006176	YTH	PF04146	2.6e-40	3
ENSSSCP00065006176	YTH	PF04146	2.6e-40	4
ENSSSCP00065006176	OB_NTP_bind	PF07717	2.9e-11	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065015147	6045	1353aa	ENSSSCP00065006176

Gene Model

Click here to download ENSSSCG00065011372's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065011372's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065045272	43.1849	21.9973	sus_scrofa_berkshire	ENSSSCP00065006176	23.6511	12.0473
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006585	18.4825	9.33852	sus_scrofa_berkshire	ENSSSCP00065006176	14.0429	7.09534
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065035950	32.6854	19.8704	sus_scrofa_berkshire	ENSSSCP00065006176	33.5551	20.3991
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065033254	53.7549	35.2767	sus_scrofa_berkshire	ENSSSCP00065006176	40.2069	26.3858
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065035308	44.801	25.0321	sus_scrofa_berkshire	ENSSSCP00065006176	25.7945	14.4124
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065002254	39.5604	26.5306	sus_scrofa_berkshire	ENSSSCP00065006176	37.2506	24.9815
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065009339	48.9331	28.8762	sus_scrofa_berkshire	ENSSSCP00065006176	25.425	15.0037
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065031844	34.9341	20.904	sus_scrofa_berkshire	ENSSSCP00065006176	27.4205	16.408
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065000152	36.6834	23.9531	sus_scrofa_berkshire	ENSSSCP00065006176	32.3725	21.1382
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065034782	32.9879	18.9983	sus_scrofa_berkshire	ENSSSCP00065006176	28.2336	16.2602
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065018010	32.3553	18.9079	sus_scrofa_berkshire	ENSSSCP00065006176	29.3422	17.1471
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065023025	45.4088	28.0503	sus_scrofa_berkshire	ENSSSCP00065006176	26.6814	16.4819
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065032842	40.9471	22.0056	sus_scrofa_berkshire	ENSSSCP00065006176	21.7295	11.6778
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065009108	29.0683	21.4907	sus_scrofa_berkshire	ENSSSCP00065006176	17.2949	12.7864
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065041977	32.3432	18.2343	sus_scrofa_berkshire	ENSSSCP00065006176	28.9727	16.3341
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065009614	47.3684	28.0186	sus_scrofa_berkshire	ENSSSCP00065006176	22.6164	13.3777
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065016609	36.2372	23.9385	sus_scrofa_berkshire	ENSSSCP00065006176	36.5854	24.1685
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065004959	37.26	23.4729	sus_scrofa_berkshire	ENSSSCP00065006176	31.5595	19.8817

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	99.7783	99.7044	sus_scrofa	ENSSSCP00000048904	94.6041	94.534
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	96.4523	95.935	sus_scrofa_usmarc	ENSSSCP00070022880	91.195	90.7058
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	96.2306	95.935	sus_scrofa_wuzhishan	ENSSSCP00005036521	93.7365	93.4485
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	100	99.9261	sus_scrofa_jinhua	ENSSSCP00060029090	100	99.9261
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	100	99.9261	sus_scrofa_pietrain	ENSSSCP00055029884	100	99.9261
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	100	99.9261	sus_scrofa_hampshire	ENSSSCP00035010886	94.6154	94.5455
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	92.7568	92.6829	sus_scrofa_meishan	ENSSSCP00040038546	94.2192	94.1441
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	97.3392	96.4523	equus_caballus	ENSECAP00000018278	93.6034	92.7505
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	99.3348	98.3001	ovis_aries_rambouillet	ENSOARP00020021748	94.0518	93.0721
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	100	100	sus_scrofa_largewhite	ENSSSCP00025020946	97.7601	97.7601
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	100	99.9261	sus_scrofa_rongchang	ENSSSCP00030038471	97.7601	97.6879
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	99.9261	99.8522	sus_scrofa_landrace	ENSSSCP00045032815	94.5455	94.4755
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	100	99.9261	sus_scrofa_bamei	ENSSSCP00050019356	100	99.9261
ENSSSCG00065011372	sus_scrofa_berkshire	ENSSSCP00065006176	99.187	98.0783	bos_taurus	ENSBTAP00000018745	93.9118	92.8621

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression