RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00065011221	Gene ID		Accession	-
Symbol	RPL10	Alias	-	Full Name	60S ribosomal protein L10
Status	Confidence	Length	4916 bases	Strand	Minus strand
Position	LUXW01012399.1 : 127118 - 132033	RNA binding domain	Ribosomal_L16
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065006120	Ribosomal_L16	PF00252	5.4e-37	1
ENSSSCP00065006122	Ribosomal_L16	PF00252	7.2e-37	1
ENSSSCP00065006119	Ribosomal_L16	PF00252	1.1e-36	1
ENSSSCP00065006118	Ribosomal_L16	PF00252	1.6e-36	1
ENSSSCP00065006125	Ribosomal_L16	PF00252	7.7e-27	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPL10-201	ENSSSCT00065015000	2827	329aa	ENSSSCP00065006118
RPL10-202	ENSSSCT00065015003	2531	282aa	ENSSSCP00065006119
RPL10-203	ENSSSCT00065015009	907	214aa	ENSSSCP00065006120
RPL10-204	ENSSSCT00065015011	791	236aa	ENSSSCP00065006122
RPL10-205	ENSSSCT00065015014	537	178aa	ENSSSCP00065006125

Gene Model

Click here to download ENSSSCG00065011221's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065011221's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065013960	98.1308	95.7944	sus_scrofa_berkshire	ENSSSCP00065006118	63.8298	62.31
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065045409	74.5098	67.6471	sus_scrofa_berkshire	ENSSSCP00065006118	23.1003	20.9726
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065030955	64.6258	53.0612	sus_scrofa_berkshire	ENSSSCP00065006118	28.8754	23.7082
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065029545	46.9697	40.9091	sus_scrofa_berkshire	ENSSSCP00065006118	18.845	16.4134

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	100	100	sus_scrofa	ENSSSCP00000035267	100	100
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	100	100	sus_scrofa_usmarc	ENSSSCP00070010475	100	100
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	100	100	sus_scrofa_wuzhishan	ENSSSCP00005007371	100	100
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	100	100	sus_scrofa_jinhua	ENSSSCP00060020882	100	100
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	99.696	99.696	sus_scrofa_pietrain	ENSSSCP00055007967	99.696	99.696
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	100	100	sus_scrofa_tibetan	ENSSSCP00015011597	100	100
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	100	100	sus_scrofa_hampshire	ENSSSCP00035026685	100	100
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	100	100	sus_scrofa_meishan	ENSSSCP00040032178	100	100
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	99.696	99.696	sus_scrofa_largewhite	ENSSSCP00025000015	99.696	99.696
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	100	100	sus_scrofa_rongchang	ENSSSCP00030008024	100	100
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	99.696	99.696	sus_scrofa_landrace	ENSSSCP00045000776	99.696	99.696
ENSSSCG00065011221	sus_scrofa_berkshire	ENSSSCP00065006118	99.696	99.696	sus_scrofa_bamei	ENSSSCP00050045254	99.696	99.696

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression