RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065011187	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	32790 bases	Strand	Minus strand
Position	LUXW01027797.1 : 289591 - 322380	RNA binding domain	Ribosomal_L19
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065006056	Ribosomal_L19	PF01245	2e-17	1
ENSSSCP00065006052	Ribosomal_L19	PF01245	2.7e-17	1
ENSSSCP00065006050	Ribosomal_L19	PF01245	3.1e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065014863	539	170aa	ENSSSCP00065006050
-	ENSSSCT00065014866	5094	359aa	ENSSSCP00065006052
-	ENSSSCT00065014873	4926	303aa	ENSSSCP00065006056

Gene Model

Click here to download ENSSSCG00065011187's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065011187's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065011187

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	99.7215	99.4429	sus_scrofa	ENSSSCP00000064268	99.7215	99.4429
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	84.1226	83.844	sus_scrofa_usmarc	ENSSSCP00070049828	99.67	99.3399
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	84.4011	84.4011	sus_scrofa_wuzhishan	ENSSSCP00005013946	100	100
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	84.4011	84.4011	sus_scrofa_jinhua	ENSSSCP00060001479	100	100
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	84.1226	83.844	sus_scrofa_pietrain	ENSSSCP00055021747	99.67	99.3399
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	84.4011	84.4011	sus_scrofa_tibetan	ENSSSCP00015004433	100	100
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	84.4011	84.4011	sus_scrofa_hampshire	ENSSSCP00035004196	100	100
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	84.4011	84.4011	sus_scrofa_meishan	ENSSSCP00040025273	100	100
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	72.4234	69.3593	equus_caballus	ENSECAP00000009017	89.0411	85.274
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	74.6518	71.5877	ovis_aries_rambouillet	ENSOARP00020003416	91.7808	88.0137
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	84.1226	83.844	sus_scrofa_largewhite	ENSSSCP00025032185	99.67	99.3399
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	84.4011	84.4011	sus_scrofa_rongchang	ENSSSCP00030004424	100	100
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	84.1226	83.844	sus_scrofa_landrace	ENSSSCP00045043148	99.67	99.3399
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	84.4011	84.4011	sus_scrofa_bamei	ENSSSCP00050004357	100	100
ENSSSCG00065011187	sus_scrofa_berkshire	ENSSSCP00065006052	74.6518	70.4735	bos_taurus	ENSBTAP00000003312	91.7808	86.6438

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression