RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065010786	Gene ID		Accession	-
Symbol	LSM10	Alias	-	Full Name	NA
Status	Confidence	Length	3835 bases	Strand	Minus strand
Position	LUXW01001856.1 : 2793209 - 2797043	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065005830	LSM	PF01423	1.9e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
LSM10-201	ENSSSCT00065014320	1418	121aa	ENSSSCP00065005830

Gene Model

Click here to download ENSSSCG00065010786's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065010786's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065010786

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa	ENSSSCP00000051263	100	100
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_usmarc	ENSSSCP00070046275	100	100
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_wuzhishan	ENSSSCP00005021566	57.0755	57.0755
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_jinhua	ENSSSCP00060039674	100	100
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_pietrain	ENSSSCP00055031958	100	100
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_tibetan	ENSSSCP00015014645	100	100
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_tibetan	ENSSSCP00015014468	100	100
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_hampshire	ENSSSCP00035006709	57.0755	57.0755
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_meishan	ENSSSCP00040034707	100	100
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	95.8678	95.0413	equus_caballus	ENSECAP00000059295	62.0321	61.4973
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	95.0413	92.562	ovis_aries_rambouillet	ENSOARP00020018377	94.2623	91.8033
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_largewhite	ENSSSCP00025014015	57.0755	57.0755
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_rongchang	ENSSSCP00030024144	57.0755	57.0755
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_landrace	ENSSSCP00045007131	100	100
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	100	100	sus_scrofa_bamei	ENSSSCP00050038559	100	100
ENSSSCG00065010786	sus_scrofa_berkshire	ENSSSCP00065005830	95.0413	92.562	bos_taurus	ENSBTAP00000033157	94.2623	91.8033

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression