RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065006086	Gene ID		Accession	-
Symbol	R3HDM4	Alias	-	Full Name	NA
Status	Confidence	Length	11462 bases	Strand	Plus strand
Position	LUXW01005822.1 : 826762 - 838223	RNA binding domain	R3H
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065003432	R3H	PF01424	1.5e-06	1
ENSSSCP00065003424	R3H	PF01424	1.6e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
R3HDM4-201	ENSSSCT00065008155	3512	275aa	ENSSSCP00065003424
R3HDM4-202	ENSSSCT00065008165	3374	272aa	ENSSSCP00065003432

Gene Model

Click here to download ENSSSCG00065006086's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065006086's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065006086

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	100	100	sus_scrofa	ENSSSCP00000014268	100	100
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	100	100	sus_scrofa_usmarc	ENSSSCP00070045559	100	100
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	100	100	sus_scrofa_jinhua	ENSSSCP00060005775	100	100
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	100	100	sus_scrofa_pietrain	ENSSSCP00055039234	100	100
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	100	100	sus_scrofa_tibetan	ENSSSCP00015047355	100	100
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	100	100	sus_scrofa_hampshire	ENSSSCP00035042034	100	100
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	100	100	sus_scrofa_meishan	ENSSSCP00040038066	100	100
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	89.0909	87.6364	equus_caballus	ENSECAP00000077442	49	48.2
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	92.7273	89.4545	ovis_aries_rambouillet	ENSOARP00020016192	53.5714	51.6807
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	100	100	sus_scrofa_largewhite	ENSSSCP00025003959	100	100
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	100	100	sus_scrofa_rongchang	ENSSSCP00030010615	100	100
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	100	100	sus_scrofa_landrace	ENSSSCP00045037975	100	100
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	100	100	sus_scrofa_bamei	ENSSSCP00050039014	100	100
ENSSSCG00065006086	sus_scrofa_berkshire	ENSSSCP00065003424	79.2727	74.1818	bos_taurus	ENSBTAP00000064171	47.7024	44.639

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression