RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065004407	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	77898 bases	Strand	Minus strand
Position	LUXW01005723.1 : 2757601 - 2835498	RNA binding domain	RNase_P_p30
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065002700	RNase_P_p30	PF01876	2.6e-65	1
ENSSSCP00065002718	RNase_P_p30	PF01876	9.2e-64	1
ENSSSCP00065002711	RNase_P_p30	PF01876	3.5e-54	1
ENSSSCP00065002713	RNase_P_p30	PF01876	2.1e-53	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00065006043	4517	289aa	ENSSSCP00065002700
-	ENSSSCT00065006062	4439	258aa	ENSSSCP00065002711
-	ENSSSCT00065006066	2524	244aa	ENSSSCP00065002713
-	ENSSSCT00065006074	2623	261aa	ENSSSCP00065002718

Gene Model

Click here to download ENSSSCG00065004407's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065004407's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065004407

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	85.8131	84.083	sus_scrofa	ENSSSCP00000061446	95.0192	93.1034
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	85.8131	84.4291	sus_scrofa_usmarc	ENSSSCP00070035304	95.0192	93.4866
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	86.1592	84.7751	sus_scrofa_wuzhishan	ENSSSCP00005003001	91.5441	90.0735
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	92.7336	92.7336	sus_scrofa_jinhua	ENSSSCP00060012268	100	100
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	92.7336	92.7336	sus_scrofa_pietrain	ENSSSCP00055028376	100	100
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	100	100	sus_scrofa_tibetan	ENSSSCP00015041612	100	100
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	100	100	sus_scrofa_hampshire	ENSSSCP00035000682	100	100
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	100	100	sus_scrofa_meishan	ENSSSCP00040008338	100	100
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	85.1211	80.2768	equus_caballus	ENSECAP00000056339	85.4167	80.5556
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	90.3114	86.8512	ovis_aries_rambouillet	ENSOARP00020012636	97.3881	93.6567
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	92.7336	92.7336	sus_scrofa_largewhite	ENSSSCP00025002832	100	100
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	60.2076	55.0173	sus_scrofa_rongchang	ENSSSCP00030028360	83.6538	76.4423
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	100	100	sus_scrofa_landrace	ENSSSCP00045006299	100	100
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	92.7336	92.7336	sus_scrofa_bamei	ENSSSCP00050047010	100	100
ENSSSCG00065004407	sus_scrofa_berkshire	ENSSSCP00065002700	91.0035	87.8893	bos_taurus	ENSBTAP00000003871	98.1343	94.7761

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression