RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00065000985	Gene ID		Accession	-
Symbol	ACO1	Alias	-	Full Name	NA
Status	Confidence	Length	63941 bases	Strand	Minus strand
Position	LUXW01008215.1 : 29920 - 93860	RNA binding domain	Aconitase , Aconitase_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00065000339	Aconitase	PF00330	5.5e-175	1
ENSSSCP00065000339	Aconitase_C	PF00694	2e-25	2
ENSSSCP00065000350	Aconitase	PF00330	5.6e-175	1
ENSSSCP00065000350	Aconitase_C	PF00694	2.4e-42	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
ACO1-201	ENSSSCT00065001184	6403	870aa	ENSSSCP00065000339
ACO1-202	ENSSSCT00065001209	2807	879aa	ENSSSCP00065000350

Gene Model

Click here to download ENSSSCG00065000985's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00065000985's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065012667	72.6984	55.873	sus_scrofa_berkshire	ENSSSCP00065000350	78.157	60.0683
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065012224	45.0249	27.4876	sus_scrofa_berkshire	ENSSSCP00065000350	41.1832	25.1422

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	97.6109	97.0421	sus_scrofa	ENSSSCP00000058798	96.5129	95.9505
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	97.6109	97.0421	sus_scrofa_usmarc	ENSSSCP00070029583	96.5129	95.9505
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	93.9704	92.1502	sus_scrofa_wuzhishan	ENSSSCP00005007233	92.6009	90.8072
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	97.8385	97.2696	sus_scrofa_jinhua	ENSSSCP00060038753	93.58	93.0359
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	97.6109	97.0421	sus_scrofa_pietrain	ENSSSCP00055018778	96.5129	95.9505
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	97.6109	97.0421	sus_scrofa_tibetan	ENSSSCP00015042492	96.5129	95.9505
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	100	100	sus_scrofa_hampshire	ENSSSCP00035001970	100	100
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	97.6109	97.0421	sus_scrofa_meishan	ENSSSCP00040012280	96.5129	95.9505
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	96.0182	93.1741	equus_caballus	ENSECAP00000077518	83.8966	81.4115
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	96.7008	93.4016	ovis_aries_rambouillet	ENSOARP00020011784	94.4444	91.2222
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	99.8862	99.8862	sus_scrofa_largewhite	ENSSSCP00025041599	99.8862	99.8862
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	99.8862	99.8862	sus_scrofa_rongchang	ENSSSCP00030029747	99.8862	99.8862
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	97.8385	97.2696	sus_scrofa_landrace	ENSSSCP00045043076	93.58	93.0359
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	97.8385	97.2696	sus_scrofa_bamei	ENSSSCP00050013584	93.58	93.0359
ENSSSCG00065000985	sus_scrofa_berkshire	ENSSSCP00065000350	96.587	93.2878	bos_taurus	ENSBTAP00000070636	94.6488	91.4158

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression