RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060072144	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	327 bases	Strand	Minus strand
Position	LUXY01108838.1 : 506593 - 506919	RNA binding domain	Ribosomal_60s
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060042754	Ribosomal_60s	PF00428	1.7e-26	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00060098566	327	108aa	ENSSSCP00060042754

Gene Model

Click here to download ENSSSCG00060072144's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060072144's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060024367	24	13.3333	sus_scrofa_jinhua	ENSSSCP00060042754	33.3333	18.5185
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060017078	33.871	23.3871	sus_scrofa_jinhua	ENSSSCP00060042754	38.8889	26.8519
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042430	38.2609	28.6957	sus_scrofa_jinhua	ENSSSCP00060042754	40.7407	30.5556
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060031432	10.9718	5.64263	sus_scrofa_jinhua	ENSSSCP00060042754	32.4074	16.6667
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060007390	75.1773	74.4681	sus_scrofa_jinhua	ENSSSCP00060042754	98.1481	97.2222
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060037516	73.4375	64.8438	sus_scrofa_jinhua	ENSSSCP00060042754	87.037	76.8519
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060009385	52.6012	50.8671	sus_scrofa_jinhua	ENSSSCP00060042754	84.2593	81.4815

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	96.2963	93.5185	equus_caballus	ENSECAP00000006580	91.2281	88.5965
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	90.7407	87.963	equus_caballus	ENSECAP00000031656	86.7257	84.0708
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	100	100	sus_scrofa_berkshire	ENSSSCP00065037977	100	100
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	93.5185	92.5926	ovis_aries_rambouillet	ENSOARP00020031580	90.1786	89.2857
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	98.1481	96.2963	ovis_aries_rambouillet	ENSOARP00020018641	92.9825	91.2281
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	98.1481	97.2222	sus_scrofa_landrace	ENSSSCP00045004805	98.1481	97.2222
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	98.1481	97.2222	sus_scrofa_bamei	ENSSSCP00050029280	98.1481	97.2222
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	100	98.1481	sus_scrofa_rongchang	ENSSSCP00030029745	100	98.1481
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	100	100	sus_scrofa_hampshire	ENSSSCP00035024597	100	100
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	99.0741	98.1481	sus_scrofa_meishan	ENSSSCP00040040331	99.0741	98.1481
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	98.1481	96.2963	bos_taurus	ENSBTAP00000024376	92.9825	91.2281
ENSSSCG00060072144	sus_scrofa_jinhua	ENSSSCP00060042754	100	99.0741	sus_scrofa_largewhite	ENSSSCP00025000837	100	99.0741

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression