RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060063593	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	387 bases	Strand	Minus strand
Position	LUXY01057359.1 : 1996481 - 1996867	RNA binding domain	Ribosomal_60s
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060037516	Ribosomal_60s	PF00428	5.9e-19	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00060086738	387	128aa	ENSSSCP00060037516

Gene Model

Click here to download ENSSSCG00060063593's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060063593's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060024367	24.6667	14	sus_scrofa_jinhua	ENSSSCP00060037516	28.9062	16.4062
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060017078	28.2258	19.3548	sus_scrofa_jinhua	ENSSSCP00060037516	27.3438	18.75
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060042430	40.8696	27.8261	sus_scrofa_jinhua	ENSSSCP00060037516	36.7188	25
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060031432	10.3448	4.70219	sus_scrofa_jinhua	ENSSSCP00060037516	25.7812	11.7188
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060009385	50.8671	43.9306	sus_scrofa_jinhua	ENSSSCP00060037516	68.75	59.375
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060007390	71.6312	64.539	sus_scrofa_jinhua	ENSSSCP00060037516	78.9062	71.0938
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060042754	87.037	76.8519	sus_scrofa_jinhua	ENSSSCP00060037516	73.4375	64.8438

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	100	100	sus_scrofa_usmarc	ENSSSCP00070038625	100	100
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	78.9062	78.9062	sus_scrofa	ENSSSCP00000015080	100	100
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	75.7812	68.75	equus_caballus	ENSECAP00000006580	85.0877	77.193
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	72.6562	64.0625	equus_caballus	ENSECAP00000031656	82.3009	72.5664
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	100	100	sus_scrofa_berkshire	ENSSSCP00065015553	100	100
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	74.2188	65.625	ovis_aries_rambouillet	ENSOARP00020031580	84.8214	75
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	78.125	70.3125	ovis_aries_rambouillet	ENSOARP00020018641	87.7193	78.9474
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	100	100	sus_scrofa_landrace	ENSSSCP00045048578	100	100
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	100	100	sus_scrofa_tibetan	ENSSSCP00015033034	100	100
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	100	100	sus_scrofa_wuzhishan	ENSSSCP00005020654	100	100
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	99.2188	99.2188	sus_scrofa_hampshire	ENSSSCP00035034275	99.2188	99.2188
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	100	100	sus_scrofa_meishan	ENSSSCP00040037369	100	100
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	78.125	70.3125	bos_taurus	ENSBTAP00000024376	87.7193	78.9474
ENSSSCG00060063593	sus_scrofa_jinhua	ENSSSCP00060037516	92.1875	92.1875	sus_scrofa_largewhite	ENSSSCP00025040668	97.5207	97.5207

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression