RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060053031	Gene ID		Accession	-
Symbol	RYBP	Alias	-	Full Name	NA
Status	Confidence	Length	85555 bases	Strand	Plus strand
Position	LUXY01098889.1 : 394609 - 480163	RNA binding domain	zf-RanBP
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060031142	zf-RanBP	PF00641	5.2e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RYBP-201	ENSSSCT00060072194	4608	228aa	ENSSSCP00060031142

Gene Model

Click here to download ENSSSCG00060053031's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060053031's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060042259	75.9804	61.7647	sus_scrofa_jinhua	ENSSSCP00060031142	67.9825	55.2632

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	100	100	sus_scrofa_usmarc	ENSSSCP00070038057	100	100
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	96.9298	96.0526	sus_scrofa	ENSSSCP00000041824	80.9524	80.2198
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	96.0526	96.0526	equus_caballus	ENSECAP00000077018	63.2948	63.2948
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	100	100	sus_scrofa_berkshire	ENSSSCP00065016687	100	100
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	99.5614	99.5614	ovis_aries_rambouillet	ENSOARP00020022622	99.5614	99.5614
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	81.1404	79.8246	sus_scrofa_landrace	ENSSSCP00045022523	83.7104	82.3529
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	100	100	sus_scrofa_landrace	ENSSSCP00045033095	100	100
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	100	100	sus_scrofa_bamei	ENSSSCP00050022882	100	100
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	96.9298	96.4912	sus_scrofa_rongchang	ENSSSCP00030015500	47.8355	47.619
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	96.9298	96.4912	sus_scrofa_tibetan	ENSSSCP00015015322	71.987	71.6612
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	96.9298	96.4912	sus_scrofa_wuzhishan	ENSSSCP00005017618	93.2489	92.827
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	96.9298	96.4912	sus_scrofa_hampshire	ENSSSCP00035039732	61.9048	61.6246
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	100	100	sus_scrofa_meishan	ENSSSCP00040021303	100	100
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	96.4912	95.614	bos_taurus	ENSBTAP00000056753	83.9695	83.2061
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	100	100	sus_scrofa_pietrain	ENSSSCP00055019846	100	100
ENSSSCG00060053031	sus_scrofa_jinhua	ENSSSCP00060031142	100	100	sus_scrofa_largewhite	ENSSSCP00025034342	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression