RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060052534	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	30136 bases	Strand	Plus strand
Position	LUXY01076684.1 : 140056 - 170191	RNA binding domain	KOW , Spt5-NGN , Spt5_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060031184	KOW	PF00467	4.1e-30	1
ENSSSCP00060031184	Spt5-NGN	PF03439	2e-26	2
ENSSSCP00060031184	Spt5_N	PF11942	3.3e-15	3
ENSSSCP00060031176	KOW	PF00467	1.9e-27	1
ENSSSCP00060031176	Spt5-NGN	PF03439	1.9e-26	2
ENSSSCP00060031176	Spt5_N	PF11942	9.9e-14	3
ENSSSCP00060031180	KOW	PF00467	2.8e-25	1
ENSSSCP00060031180	Spt5_N	PF11942	3e-15	2
ENSSSCP00060031219	KOW	PF00467	5.2e-23	1
ENSSSCP00060031219	Spt5-NGN	PF03439	1.8e-26	2
ENSSSCP00060031219	Spt5_N	PF11942	1.8e-06	3
ENSSSCP00060031209	KOW	PF00467	6.7e-23	1
ENSSSCP00060031209	Spt5-NGN	PF03439	1.9e-26	2
ENSSSCP00060031209	Spt5_N	PF11942	9.8e-14	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00060072267	5315	1043aa	ENSSSCP00060031176
-	ENSSSCT00060072272	3407	1003aa	ENSSSCP00060031180
-	ENSSSCT00060072279	3744	1087aa	ENSSSCP00060031184
-	ENSSSCT00060072342	3123	1040aa	ENSSSCP00060031209
-	ENSSSCT00060072366	3006	1001aa	ENSSSCP00060031219

Gene Model

Click here to download ENSSSCG00060052534's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060052534's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060052534

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	99.908	99.908	sus_scrofa_usmarc	ENSSSCP00070006797	100	100
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	99.816	99.816	sus_scrofa	ENSSSCP00000069273	100	100
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	99.816	99.724	equus_caballus	ENSECAP00000035331	99.816	99.724
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	100	100	sus_scrofa_berkshire	ENSSSCP00065006397	100	100
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	99.816	99.816	ovis_aries_rambouillet	ENSOARP00020032430	99.816	99.816
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	100	100	sus_scrofa_landrace	ENSSSCP00045041617	100	100
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	100	100	sus_scrofa_bamei	ENSSSCP00050004454	100	100
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	100	100	sus_scrofa_rongchang	ENSSSCP00030043321	100	100
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	100	100	sus_scrofa_tibetan	ENSSSCP00015012613	100	100
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	99.816	99.816	sus_scrofa_wuzhishan	ENSSSCP00005041869	99.816	99.816
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	100	100	sus_scrofa_hampshire	ENSSSCP00035004761	100	100
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	100	100	sus_scrofa_meishan	ENSSSCP00040009145	100	100
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	99.908	99.908	bos_taurus	ENSBTAP00000071865	99.908	99.908
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	100	100	sus_scrofa_pietrain	ENSSSCP00055011713	100	100
ENSSSCG00060052534	sus_scrofa_jinhua	ENSSSCP00060031184	100	100	sus_scrofa_largewhite	ENSSSCP00025025414	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression