RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060051968	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	20087 bases	Strand	Minus strand
Position	LUXY01069442.1 : 2371243 - 2391329	RNA binding domain	OAS1_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060030523	OAS1_C	PF10421	1.4e-160	1
ENSSSCP00060030523	OAS1_C	PF10421	1.4e-160	2
ENSSSCP00060030526	OAS1_C	PF10421	1.5e-160	1
ENSSSCP00060030526	OAS1_C	PF10421	1.5e-160	2
ENSSSCP00060030540	OAS1_C	PF10421	2.4e-160	1
ENSSSCP00060030540	OAS1_C	PF10421	2.4e-160	2
ENSSSCP00060030516	OAS1_C	PF10421	3e-159	1
ENSSSCP00060030516	OAS1_C	PF10421	3e-159	2
ENSSSCP00060030531	OAS1_C	PF10421	3.6e-159	1
ENSSSCP00060030531	OAS1_C	PF10421	3.6e-159	2
ENSSSCP00060030535	OAS1_C	PF10421	2.6e-135	1
ENSSSCP00060030535	OAS1_C	PF10421	2.6e-135	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00060070736	4114	682aa	ENSSSCP00060030516
-	ENSSSCT00060070754	4671	624aa	ENSSSCP00060030523
-	ENSSSCT00060070759	3866	629aa	ENSSSCP00060030526
-	ENSSSCT00060070766	4188	684aa	ENSSSCP00060030531
-	ENSSSCT00060070775	3767	639aa	ENSSSCP00060030535
-	ENSSSCT00060070786	2214	713aa	ENSSSCP00060030540

Gene Model

Click here to download ENSSSCG00060051968's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060051968's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060047448	62.9834	43.0939	sus_scrofa_jinhua	ENSSSCP00060030540	15.9888	10.9397
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060018959	55.4598	35.9195	sus_scrofa_jinhua	ENSSSCP00060030540	27.0687	17.5316

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	97.756	97.4755	sus_scrofa_usmarc	ENSSSCP00070014609	98.5856	98.3027
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	96.4937	96.0729	sus_scrofa	ENSSSCP00000010548	96.4937	96.0729
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	82.4684	69.8457	equus_caballus	ENSECAP00000012529	82.5843	69.9438
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	100	100	sus_scrofa_berkshire	ENSSSCP00065041023	100	100
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	83.7307	74.0533	ovis_aries_rambouillet	ENSOARP00020022593	82.2314	72.7273
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	99.8597	99.8597	sus_scrofa_landrace	ENSSSCP00045045764	99.8597	99.8597
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	83.31	79.5231	sus_scrofa_bamei	ENSSSCP00050020095	82.6147	78.8595
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	96.4937	96.0729	sus_scrofa_rongchang	ENSSSCP00030039314	96.4937	96.0729
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	98.1767	97.8962	sus_scrofa_tibetan	ENSSSCP00015001152	99.0099	98.727
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	100	100	sus_scrofa_wuzhishan	ENSSSCP00005037427	100	100
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	98.317	97.8962	sus_scrofa_hampshire	ENSSSCP00035042386	99.1513	98.727
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	96.3534	95.9327	sus_scrofa_meishan	ENSSSCP00040025707	96.3534	95.9327
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	83.7307	73.4923	bos_taurus	ENSBTAP00000019477	83.6134	73.3894
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	94.2496	94.1094	sus_scrofa_pietrain	ENSSSCP00055022848	99.4083	99.2604
ENSSSCG00060051968	sus_scrofa_jinhua	ENSSSCP00060030540	98.0365	97.756	sus_scrofa_largewhite	ENSSSCP00025033511	98.8685	98.5856

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression