RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060051434	Gene ID		Accession	-
Symbol	SFSWAP	Alias	-	Full Name	NA
Status	Confidence	Length	78236 bases	Strand	Plus strand
Position	LUXY01048766.1 : 35585 - 113820	RNA binding domain	DRY_EERY , Surp
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060030198	DRY_EERY	PF09750	1.9e-33	1
ENSSSCP00060030198	Surp	PF01805	2.2e-26	2
ENSSSCP00060030198	Surp	PF01805	2.2e-26	3
ENSSSCP00060030203	DRY_EERY	PF09750	2e-33	1
ENSSSCP00060030203	Surp	PF01805	2.4e-26	2
ENSSSCP00060030203	Surp	PF01805	2.4e-26	3
ENSSSCP00060030195	DRY_EERY	PF09750	2.2e-33	1
ENSSSCP00060030195	Surp	PF01805	2.7e-26	2
ENSSSCP00060030195	Surp	PF01805	2.7e-26	3
ENSSSCP00060030201	DRY_EERY	PF09750	8.1e-31	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
SFSWAP-201	ENSSSCT00060070008	3475	944aa	ENSSSCP00060030195
SFSWAP-202	ENSSSCT00060070013	3045	867aa	ENSSSCP00060030198
SFSWAP-203	ENSSSCT00060070017	5605	137aa	ENSSSCP00060030201
SFSWAP-204	ENSSSCT00060070020	4829	891aa	ENSSSCP00060030203

Gene Model

Click here to download ENSSSCG00060051434's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060051434's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060014420	38.9053	22.929	sus_scrofa_jinhua	ENSSSCP00060030195	27.8602	16.4195

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	100	100	sus_scrofa_usmarc	ENSSSCP00070031353	100	100
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	100	100	sus_scrofa	ENSSSCP00000010406	100	100
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	93.9619	92.0551	equus_caballus	ENSECAP00000036540	94.8663	92.9412
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	99.8941	99.7881	sus_scrofa_berkshire	ENSSSCP00065010438	99.8941	99.7881
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	96.822	95.6568	ovis_aries_rambouillet	ENSOARP00020030331	91.9517	90.8451
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	100	100	sus_scrofa_landrace	ENSSSCP00045007197	100	100
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	100	100	sus_scrofa_bamei	ENSSSCP00050042750	100	100
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	100	100	sus_scrofa_rongchang	ENSSSCP00030013503	100	100
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	100	100	sus_scrofa_tibetan	ENSSSCP00015018037	100	100
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	99.4703	99.3644	sus_scrofa_wuzhishan	ENSSSCP00005042640	98.8421	98.7368
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	99.8941	99.7881	sus_scrofa_hampshire	ENSSSCP00035037226	99.8941	99.7881
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	100	100	sus_scrofa_meishan	ENSSSCP00040028718	100	100
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	97.1398	95.9746	bos_taurus	ENSBTAP00000062836	92.2535	91.1469
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	100	100	sus_scrofa_pietrain	ENSSSCP00055037339	100	100
ENSSSCG00060051434	sus_scrofa_jinhua	ENSSSCP00060030195	100	100	sus_scrofa_largewhite	ENSSSCP00025019097	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression