Description

Ensembl ID ENSSSCG00060045040 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 127715 bases Strand Plus strand
Position LUXY01074716.1 : 1638170 - 1765884 RNA binding domain DEAD , DNA_pol_A_exo1 , HRDC
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00060026183 DEAD PF00270 2.8e-16 1
ENSSSCP00060026183 DNA_pol_A_exo1 PF01612 2.5e-25 2
ENSSSCP00060026183 HRDC PF00570 4.5e-12 3
ENSSSCP00060026173 DEAD PF00270 2.9e-16 1
ENSSSCP00060026173 DNA_pol_A_exo1 PF01612 1.5e-35 2
ENSSSCP00060026173 HRDC PF00570 4.6e-12 3
ENSSSCP00060026181 DEAD PF00270 3.2e-16 1
ENSSSCP00060026181 DNA_pol_A_exo1 PF01612 1.6e-35 2
ENSSSCP00060026181 HRDC PF00570 4.9e-12 3
ENSSSCP00060026185 DEAD PF00270 3.5e-16 1
ENSSSCP00060026185 DNA_pol_A_exo1 PF01612 1.7e-35 2
ENSSSCP00060026185 HRDC PF00570 5.1e-12 3
ENSSSCP00060026175 DEAD PF00270 3.5e-16 1
ENSSSCP00060026175 DNA_pol_A_exo1 PF01612 1.7e-35 2
ENSSSCP00060026175 HRDC PF00570 5.2e-12 3
ENSSSCP00060026177 DEAD PF00270 3.6e-16 1
ENSSSCP00060026177 DNA_pol_A_exo1 PF01612 1.7e-35 2
ENSSSCP00060026177 HRDC PF00570 5.5e-12 3
ENSSSCP00060026169 DEAD PF00270 3.6e-16 1
ENSSSCP00060026169 DNA_pol_A_exo1 PF01612 1.7e-35 2
ENSSSCP00060026169 HRDC PF00570 5.5e-12 3
ENSSSCP00060026188 DEAD PF00270 3.7e-16 1
ENSSSCP00060026188 DNA_pol_A_exo1 PF01612 1.7e-35 2
ENSSSCP00060026188 HRDC PF00570 5.6e-12 3
ENSSSCP00060026187 DEAD PF00270 5.5e-16 1
ENSSSCP00060026187 DNA_pol_A_exo1 PF01612 1.6e-35 2
ENSSSCP00060026187 HRDC PF00570 4.9e-12 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00060061098 5604 1461aa ENSSSCP00060026169
- ENSSSCT00060061103 5342 1364aa ENSSSCP00060026173
- ENSSSCT00060061108 6524 1447aa ENSSSCP00060026175
- ENSSSCT00060061113 6255 1453aa ENSSSCP00060026177
- ENSSSCT00060061122 5550 1403aa ENSSSCP00060026181
- ENSSSCT00060061125 5531 1342aa ENSSSCP00060026183
- ENSSSCT00060061133 6589 1424aa ENSSSCP00060026185
- ENSSSCT00060061136 5530 1403aa ENSSSCP00060026187
- ENSSSCT00060061141 4673 1466aa ENSSSCP00060026188

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006004288744.37627.1186sus_scrofa_jinhuaENSSSCP0006002618819.645312.0055
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002034335.437920.5703sus_scrofa_jinhuaENSSSCP0006002618823.738113.779
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002740431.336716.3623sus_scrofa_jinhuaENSSSCP0006002618829.263315.2797

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618895.566295.2251sus_scrofa_usmarcENSSSCP0007004523799.644499.2888
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618899.795499.7271sus_scrofaENSSSCP0000001678699.795499.7271
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618887.312478.1037equus_caballusENSECAP0000000029688.642779.2936
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618899.658999.5907sus_scrofa_berkshireENSSSCP0006504427699.658999.5907
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618899.658999.5907sus_scrofa_landraceENSSSCP0004500867699.658999.5907
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618810099.9318sus_scrofa_bameiENSSSCP0005000055710099.9318
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP00060026188100100sus_scrofa_rongchangENSSSCP00030047480100100
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618878.171976.3984sus_scrofa_tibetanENSSSCP0001500158491.974389.8876
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP00060026188100100sus_scrofa_wuzhishanENSSSCP00005040299100100
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618899.931899.7954sus_scrofa_hampshireENSSSCP0003500123899.931899.7954
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618899.931899.8636sus_scrofa_meishanENSSSCP0004002101499.931899.8636
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618885.197876.1937bos_taurusENSBTAP0000002877888.960179.5584
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618899.795499.7271sus_scrofa_pietrainENSSSCP0005500200999.795499.7271
ENSSSCG00060045040sus_scrofa_jinhuaENSSSCP0006002618899.727199.6589sus_scrofa_largewhiteENSSSCP0002503016299.727199.6589

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression