RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060040537	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3612 bases	Strand	Minus strand
Position	LUXY01032771.1 : 175089 - 178700	RNA binding domain	Ribosomal_L27e , KOW
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060023451	Ribosomal_L27e	PF01777	1.4e-39	1
ENSSSCP00060023451	KOW	PF00467	8.2e-06	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00060054936	1799	136aa	ENSSSCP00060023451

Gene Model

Click here to download ENSSSCG00060040537's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060040537's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060024200	97.7941	95.5882	sus_scrofa_jinhua	ENSSSCP00060023451	97.7941	95.5882

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060023451	98.5294	98.5294	sus_scrofa_usmarc	ENSSSCP00070019849	98.5294	98.5294
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060023451	98.5294	98.5294	sus_scrofa	ENSSSCP00000024028	98.5294	98.5294
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060023451	97.7941	97.7941	ovis_aries_rambouillet	ENSOARP00020027350	98.5185	98.5185
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060023451	97.7941	97.0588	ovis_aries_rambouillet	ENSOARP00020010254	97.7941	97.0588
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060023451	98.5294	98.5294	sus_scrofa_landrace	ENSSSCP00045009127	98.5294	98.5294
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060023451	98.5294	98.5294	sus_scrofa_bamei	ENSSSCP00050034527	98.5294	98.5294
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060023451	98.5294	97.7941	sus_scrofa_rongchang	ENSSSCP00030047070	98.5294	97.7941
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060023451	97.7941	97.0588	sus_scrofa_tibetan	ENSSSCP00015043148	97.7941	97.0588
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060023451	98.5294	98.5294	sus_scrofa_wuzhishan	ENSSSCP00005008310	98.5294	98.5294
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060023451	98.5294	97.7941	sus_scrofa_meishan	ENSSSCP00040013313	98.5294	97.7941
ENSSSCG00060040537	sus_scrofa_jinhua	ENSSSCP00060023451	98.5294	98.5294	bos_taurus	ENSBTAP00000023183	98.5294	98.5294

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression