Description

Ensembl ID ENSSSCG00060032029 Gene ID Accession -
Symbol GFM1 Alias - Full Name NA
Status Confidence Length 47320 bases Strand Minus strand
Position LUXY01064181.1 : 516730 - 564049 RNA binding domain GTP_EFTU , EFG_IV , GTP_EFTU_D2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00060018481 GTP_EFTU PF00009 7.1e-64 1
ENSSSCP00060018481 EFG_IV PF03764 8.5e-35 2
ENSSSCP00060018481 GTP_EFTU_D2 PF03144 6e-17 3
ENSSSCP00060018488 GTP_EFTU PF00009 1.2e-63 1
ENSSSCP00060018488 EFG_IV PF03764 8.3e-35 2
ENSSSCP00060018488 GTP_EFTU_D2 PF03144 6.5e-17 3
ENSSSCP00060018477 GTP_EFTU PF00009 1.2e-63 1
ENSSSCP00060018477 EFG_IV PF03764 8.7e-35 2
ENSSSCP00060018477 GTP_EFTU_D2 PF03144 6.8e-17 3
ENSSSCP00060018472 GTP_EFTU PF00009 1.9e-63 1
ENSSSCP00060018472 EFG_IV PF03764 9.8e-35 2
ENSSSCP00060018472 GTP_EFTU_D2 PF03144 7.2e-17 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
GFM1-201 ENSSSCT00060043355 5805 773aa ENSSSCP00060018472
GFM1-202 ENSSSCT00060043367 5748 754aa ENSSSCP00060018477
GFM1-203 ENSSSCT00060043374 5592 702aa ENSSSCP00060018481
GFM1-204 ENSSSCT00060043389 3914 735aa ENSSSCP00060018488

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006001341620.190810.6518sus_scrofa_jinhuaENSSSCP0006001847216.42958.66753
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006000962147.809332.8608sus_scrofa_jinhuaENSSSCP0006001847247.994832.9884
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006000395225.565217.2174sus_scrofa_jinhuaENSSSCP0006001847219.016812.8072
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006002596831.097614.6341sus_scrofa_jinhuaENSSSCP000600184726.597673.10479
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006001094727.330513.3475sus_scrofa_jinhuaENSSSCP0006001847216.68828.15006
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006004477424.691413.9918sus_scrofa_jinhuaENSSSCP0006001847231.047917.5938
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP000600034852513.3036sus_scrofa_jinhuaENSSSCP0006001847236.222519.2755
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006004734114.77558.4898sus_scrofa_jinhuaENSSSCP0006001847223.415313.4541
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006002412621.428611.3703sus_scrofa_jinhuaENSSSCP0006001847219.016810.0906
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006000455332.097318.1924sus_scrofa_jinhuaENSSSCP0006001847235.834420.3105
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006002428319.28259.11809sus_scrofa_jinhuaENSSSCP0006001847216.68827.89133
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006001581626.892415.7371sus_scrofa_jinhuaENSSSCP0006001847217.464410.2199
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006002387023.809514.6259sus_scrofa_jinhuaENSSSCP0006001847218.111311.1255
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006003235830.493318.9836sus_scrofa_jinhuaENSSSCP0006001847226.390716.4295
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006003034630.368818.0043sus_scrofa_jinhuaENSSSCP0006001847218.111310.7374
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006003940128.251117.2646sus_scrofa_jinhuaENSSSCP0006001847216.30019.96119
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006004626725.696613.7771sus_scrofa_jinhuaENSSSCP0006001847221.474811.5136
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006001715923.611113.5417sus_scrofa_jinhuaENSSSCP000600184728.79695.04528
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006001697918.770810.4651sus_scrofa_jinhuaENSSSCP0006001847214.61848.15006
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006001037719.531210.3125sus_scrofa_jinhuaENSSSCP0006001847216.17088.53816
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006000892022.148512.5995sus_scrofa_jinhuaENSSSCP0006001847221.604112.2898

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP00060018472100100sus_scrofa_usmarcENSSSCP00070001452100100
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP00060018472100100sus_scrofaENSSSCP00000045035100100
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006001847228.201826.6494equus_caballusENSECAP0000007459792.76687.6596
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP00060018472100100sus_scrofa_berkshireENSSSCP00065022691100100
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006001847295.342892.4968ovis_aries_rambouilletENSOARP0002000022397.875294.9535
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP00060018472100100sus_scrofa_landraceENSSSCP00045030502100100
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP00060018472100100sus_scrofa_bameiENSSSCP00050000570100100
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP00060018472100100sus_scrofa_rongchangENSSSCP00030006493100100
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP00060018472100100sus_scrofa_tibetanENSSSCP00015039813100100
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006001847299.223899.2238sus_scrofa_wuzhishanENSSSCP0000502403799.223899.2238
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP00060018472100100sus_scrofa_hampshireENSSSCP00035033646100100
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006001847299.870699.8706sus_scrofa_meishanENSSSCP0004001949699.870699.8706
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP0006001847295.860393.0142bos_taurusENSBTAP0000003986598.406495.4847
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP00060018472100100sus_scrofa_pietrainENSSSCP00055028948100100
ENSSSCG00060032029sus_scrofa_jinhuaENSSSCP00060018472100100sus_scrofa_largewhiteENSSSCP00025017764100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression