RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSSSCG00060032029 | Gene ID |
|
Accession |
- |
Symbol |
GFM1 |
Alias |
- |
Full Name |
NA |
Status |
Confidence |
Length |
47320 bases |
Strand |
Minus strand |
Position |
LUXY01064181.1 : 516730 - 564049 |
RNA binding domain |
GTP_EFTU , EFG_IV , GTP_EFTU_D2 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSSSCP00060018481 |
GTP_EFTU |
PF00009 |
7.1e-64 |
1 |
ENSSSCP00060018481 |
EFG_IV |
PF03764 |
8.5e-35 |
2 |
ENSSSCP00060018481 |
GTP_EFTU_D2 |
PF03144 |
6e-17 |
3 |
ENSSSCP00060018488 |
GTP_EFTU |
PF00009 |
1.2e-63 |
1 |
ENSSSCP00060018488 |
EFG_IV |
PF03764 |
8.3e-35 |
2 |
ENSSSCP00060018488 |
GTP_EFTU_D2 |
PF03144 |
6.5e-17 |
3 |
ENSSSCP00060018477 |
GTP_EFTU |
PF00009 |
1.2e-63 |
1 |
ENSSSCP00060018477 |
EFG_IV |
PF03764 |
8.7e-35 |
2 |
ENSSSCP00060018477 |
GTP_EFTU_D2 |
PF03144 |
6.8e-17 |
3 |
ENSSSCP00060018472 |
GTP_EFTU |
PF00009 |
1.9e-63 |
1 |
ENSSSCP00060018472 |
EFG_IV |
PF03764 |
9.8e-35 |
2 |
ENSSSCP00060018472 |
GTP_EFTU_D2 |
PF03144 |
7.2e-17 |
3 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
GFM1-201 |
ENSSSCT00060043355 |
5805 |
773aa |
ENSSSCP00060018472 |
GFM1-202 |
ENSSSCT00060043367 |
5748 |
754aa |
ENSSSCP00060018477 |
GFM1-203 |
ENSSSCT00060043374 |
5592 |
702aa |
ENSSSCP00060018481 |
GFM1-204 |
ENSSSCT00060043389 |
3914 |
735aa |
ENSSSCP00060018488 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060013416 | 20.1908 | 10.6518 | sus_scrofa_jinhua | ENSSSCP00060018472 | 16.4295 | 8.66753 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060009621 | 47.8093 | 32.8608 | sus_scrofa_jinhua | ENSSSCP00060018472 | 47.9948 | 32.9884 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060003952 | 25.5652 | 17.2174 | sus_scrofa_jinhua | ENSSSCP00060018472 | 19.0168 | 12.8072 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060025968 | 31.0976 | 14.6341 | sus_scrofa_jinhua | ENSSSCP00060018472 | 6.59767 | 3.10479 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060010947 | 27.3305 | 13.3475 | sus_scrofa_jinhua | ENSSSCP00060018472 | 16.6882 | 8.15006 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060044774 | 24.6914 | 13.9918 | sus_scrofa_jinhua | ENSSSCP00060018472 | 31.0479 | 17.5938 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060003485 | 25 | 13.3036 | sus_scrofa_jinhua | ENSSSCP00060018472 | 36.2225 | 19.2755 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060047341 | 14.7755 | 8.4898 | sus_scrofa_jinhua | ENSSSCP00060018472 | 23.4153 | 13.4541 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060024126 | 21.4286 | 11.3703 | sus_scrofa_jinhua | ENSSSCP00060018472 | 19.0168 | 10.0906 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060004553 | 32.0973 | 18.1924 | sus_scrofa_jinhua | ENSSSCP00060018472 | 35.8344 | 20.3105 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060024283 | 19.2825 | 9.11809 | sus_scrofa_jinhua | ENSSSCP00060018472 | 16.6882 | 7.89133 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060015816 | 26.8924 | 15.7371 | sus_scrofa_jinhua | ENSSSCP00060018472 | 17.4644 | 10.2199 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060023870 | 23.8095 | 14.6259 | sus_scrofa_jinhua | ENSSSCP00060018472 | 18.1113 | 11.1255 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060032358 | 30.4933 | 18.9836 | sus_scrofa_jinhua | ENSSSCP00060018472 | 26.3907 | 16.4295 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060030346 | 30.3688 | 18.0043 | sus_scrofa_jinhua | ENSSSCP00060018472 | 18.1113 | 10.7374 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060039401 | 28.2511 | 17.2646 | sus_scrofa_jinhua | ENSSSCP00060018472 | 16.3001 | 9.96119 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060046267 | 25.6966 | 13.7771 | sus_scrofa_jinhua | ENSSSCP00060018472 | 21.4748 | 11.5136 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060017159 | 23.6111 | 13.5417 | sus_scrofa_jinhua | ENSSSCP00060018472 | 8.7969 | 5.04528 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060016979 | 18.7708 | 10.4651 | sus_scrofa_jinhua | ENSSSCP00060018472 | 14.6184 | 8.15006 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060010377 | 19.5312 | 10.3125 | sus_scrofa_jinhua | ENSSSCP00060018472 | 16.1708 | 8.53816 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060008920 | 22.1485 | 12.5995 | sus_scrofa_jinhua | ENSSSCP00060018472 | 21.6041 | 12.2898 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 100 | 100 | sus_scrofa_usmarc | ENSSSCP00070001452 | 100 | 100 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 100 | 100 | sus_scrofa | ENSSSCP00000045035 | 100 | 100 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 28.2018 | 26.6494 | equus_caballus | ENSECAP00000074597 | 92.766 | 87.6596 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 100 | 100 | sus_scrofa_berkshire | ENSSSCP00065022691 | 100 | 100 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 95.3428 | 92.4968 | ovis_aries_rambouillet | ENSOARP00020000223 | 97.8752 | 94.9535 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 100 | 100 | sus_scrofa_landrace | ENSSSCP00045030502 | 100 | 100 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 100 | 100 | sus_scrofa_bamei | ENSSSCP00050000570 | 100 | 100 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 100 | 100 | sus_scrofa_rongchang | ENSSSCP00030006493 | 100 | 100 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 100 | 100 | sus_scrofa_tibetan | ENSSSCP00015039813 | 100 | 100 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 99.2238 | 99.2238 | sus_scrofa_wuzhishan | ENSSSCP00005024037 | 99.2238 | 99.2238 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 100 | 100 | sus_scrofa_hampshire | ENSSSCP00035033646 | 100 | 100 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 99.8706 | 99.8706 | sus_scrofa_meishan | ENSSSCP00040019496 | 99.8706 | 99.8706 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 95.8603 | 93.0142 | bos_taurus | ENSBTAP00000039865 | 98.4064 | 95.4847 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 100 | 100 | sus_scrofa_pietrain | ENSSSCP00055028948 | 100 | 100 |
ENSSSCG00060032029 | sus_scrofa_jinhua | ENSSSCP00060018472 | 100 | 100 | sus_scrofa_largewhite | ENSSSCP00025017764 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |