RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060029871	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	375 bases	Strand	Plus strand
Position	LUXY01070050.1 : 56 - 430	RNA binding domain	Ribosomal_60s
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060017078	Ribosomal_60s	PF00428	1.6e-22	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download ENSSSCG00060029871's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060029871's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060024367	48	35.3333	sus_scrofa_jinhua	ENSSSCP00060017078	58.0645	42.7419
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060042430	64.3478	51.3043	sus_scrofa_jinhua	ENSSSCP00060017078	59.6774	47.5806
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060007390	30.4965	21.2766	sus_scrofa_jinhua	ENSSSCP00060017078	34.6774	24.1935
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060037516	27.3438	18.75	sus_scrofa_jinhua	ENSSSCP00060017078	28.2258	19.3548
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060042754	38.8889	26.8519	sus_scrofa_jinhua	ENSSSCP00060017078	33.871	23.3871
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060009385	20.8092	13.8728	sus_scrofa_jinhua	ENSSSCP00060017078	29.0323	19.3548
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060031432	10.9718	5.95611	sus_scrofa_jinhua	ENSSSCP00060017078	28.2258	15.3226

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060017078	67.7419	54.8387	sus_scrofa	ENSSSCP00000013652	73.6842	59.6491
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060017078	67.7419	54.0323	equus_caballus	ENSECAP00000000003	71.7949	57.265
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060017078	63.7097	49.1936	ovis_aries_rambouillet	ENSOARP00020014848	68.6957	53.0435
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060017078	63.7097	45.9677	ovis_aries_rambouillet	ENSOARP00020021256	54.1096	39.0411
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060017078	63.7097	50.8064	sus_scrofa_rongchang	ENSSSCP00030021433	68.6957	54.7826
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060017078	66.129	48.3871	bos_taurus	ENSBTAP00000048042	63.0769	46.1538
ENSSSCG00060029871	sus_scrofa_jinhua	ENSSSCP00060017078	67.7419	53.2258	bos_taurus	ENSBTAP00000002326	73.0435	57.3913

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression