Description

Ensembl ID ENSSSCG00060028500 Gene ID Accession -
Symbol PRPF8 Alias - Full Name NA
Status Confidence Length 33617 bases Strand Plus strand
Position LUXY01007927.1 : 1131779 - 1165395 RNA binding domain PROCT , PRP8_domainIV , PRO8NT , U6-snRNA_bdg , PROCN , RRM_4 , U5_2-snRNA_bdg
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00060016401 PROCT PF08084 4.8e-52 1
ENSSSCP00060016401 PRP8_domainIV PF12134 4.4e-129 2
ENSSSCP00060016401 PRO8NT PF08082 2e-85 3
ENSSSCP00060016401 U6-snRNA_bdg PF10596 5.1e-89 4
ENSSSCP00060016401 PROCN PF08083 6.8e-234 5
ENSSSCP00060016401 RRM_4 PF10598 1e-47 6
ENSSSCP00060016401 U5_2-snRNA_bdg PF10597 9.9e-73 7

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
PRPF8-201 ENSSSCT00060038556 7291 2335aa ENSSSCP00060016401

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00060028500

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100sus_scrofa_usmarcENSSSCP00070024166100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100sus_scrofaENSSSCP00000018877100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100equus_caballusENSECAP00000018808100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100sus_scrofa_berkshireENSSSCP00065034617100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100ovis_aries_rambouilletENSOARP00020029535100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100sus_scrofa_landraceENSSSCP00045028768100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100sus_scrofa_bameiENSSSCP00050007806100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100sus_scrofa_rongchangENSSSCP00030039505100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100sus_scrofa_tibetanENSSSCP00015035916100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP0006001640199.186399.1863sus_scrofa_wuzhishanENSSSCP00005017312100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100sus_scrofa_hampshireENSSSCP00035032717100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100sus_scrofa_meishanENSSSCP00040007929100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100bos_taurusENSBTAP00000043577100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP0006001640198.972298.9722sus_scrofa_pietrainENSSSCP00055037402100100
ENSSSCG00060028500sus_scrofa_jinhuaENSSSCP00060016401100100sus_scrofa_largewhiteENSSSCP00025046189100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression