RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060023892	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	4274 bases	Strand	Minus strand
Position	LUXY01063798.1 : 1850247 - 1854520	RNA binding domain	zf-U11-48K
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060013901	zf-U11-48K	PF05253	7.1e-20	1
ENSSSCP00060013901	zf-U11-48K	PF05253	7.1e-20	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00060032422	451	112aa	ENSSSCP00060013901

Gene Model

Click here to download ENSSSCG00060023892's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060023892's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060020894	13.8462	8.61539	sus_scrofa_jinhua	ENSSSCP00060013901	40.1786	25
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013831	32.3353	20.3593	sus_scrofa_jinhua	ENSSSCP00060013901	48.2143	30.3571
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060005713	45.2381	36.3095	sus_scrofa_jinhua	ENSSSCP00060013901	67.8571	54.4643

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	88.3929	83.9286	sus_scrofa_usmarc	ENSSSCP00070051250	64.7059	61.4379
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	89.2857	86.6071	sus_scrofa	ENSSSCP00000000311	91.7431	88.9908
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	79.4643	70.5357	equus_caballus	ENSECAP00000071495	57.7922	51.2987
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	100	99.1071	sus_scrofa_berkshire	ENSSSCP00065020649	100	99.1071
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	100	99.1071	sus_scrofa_landrace	ENSSSCP00045002371	100	99.1071
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	100	100	sus_scrofa_bamei	ENSSSCP00050000319	100	100
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	100	100	sus_scrofa_rongchang	ENSSSCP00030023869	100	100
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	100	100	sus_scrofa_tibetan	ENSSSCP00015003699	100	100
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	100	99.1071	sus_scrofa_hampshire	ENSSSCP00035003784	100	99.1071
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	100	99.1071	sus_scrofa_meishan	ENSSSCP00040047980	100	99.1071
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	100	100	sus_scrofa_pietrain	ENSSSCP00055025519	100	100
ENSSSCG00060023892	sus_scrofa_jinhua	ENSSSCP00060013901	100	99.1071	sus_scrofa_largewhite	ENSSSCP00025033008	100	99.1071

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression