Description

Ensembl ID ENSSSCG00060020934 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 44305 bases Strand Minus strand
Position LUXY01048925.1 : 1444290 - 1488594 RNA binding domain RNase_PH , RNase_PH_C , PNPase , KH_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00060012155 RNase_PH PF01138 7.5e-37 1
ENSSSCP00060012155 RNase_PH PF01138 7.5e-37 2
ENSSSCP00060012155 RNase_PH_C PF03725 5.8e-16 3
ENSSSCP00060012155 PNPase PF03726 1.5e-07 4
ENSSSCP00060012155 KH_1 PF00013 8.9e-08 5
ENSSSCP00060012161 RNase_PH PF01138 4.3e-34 1
ENSSSCP00060012161 RNase_PH PF01138 4.3e-34 2
ENSSSCP00060012161 RNase_PH_C PF03725 4.8e-16 3
ENSSSCP00060012161 PNPase PF03726 1.4e-07 4
ENSSSCP00060012161 KH_1 PF00013 8.1e-08 5
ENSSSCP00060012179 RNase_PH PF01138 1.5e-33 1
ENSSSCP00060012179 RNase_PH PF01138 1.5e-33 2
ENSSSCP00060012179 RNase_PH_C PF03725 5.7e-16 3
ENSSSCP00060012179 PNPase PF03726 1.5e-07 4
ENSSSCP00060012179 KH_1 PF00013 8.8e-08 5
ENSSSCP00060012157 RNase_PH PF01138 5.9e-26 1
ENSSSCP00060012157 RNase_PH PF01138 5.9e-26 2
ENSSSCP00060012157 RNase_PH_C PF03725 4.6e-16 3
ENSSSCP00060012157 PNPase PF03726 1.3e-07 4
ENSSSCP00060012157 KH_1 PF00013 7.6e-08 5

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00060028385 4749 769aa ENSSSCP00060012155
- ENSSSCT00060028388 4581 713aa ENSSSCP00060012157
- ENSSSCT00060028395 6919 729aa ENSSSCP00060012161
- ENSSSCT00060028423 4998 775aa ENSSSCP00060012179

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00060020934

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217994.193693.2903sus_scrofa_usmarcENSSSCP0007005197593.112292.2194
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217994.193693.2903sus_scrofaENSSSCP0000004525393.112292.2194
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217992.774289.0323equus_caballusENSECAP0000001822387.7984.2491
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217993.161392sus_scrofa_berkshireENSSSCP0006500375291.740890.5972
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217993.161389.9355ovis_aries_rambouilletENSOARP0002000019292.091888.9031
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217994.193693.2903sus_scrofa_landraceENSSSCP0004502152793.112292.2194
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP00060012179100100sus_scrofa_bameiENSSSCP00050018842100100
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217993.161392sus_scrofa_rongchangENSSSCP0003004837491.740890.5972
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217994.193693.2903sus_scrofa_tibetanENSSSCP0001502732893.112292.2194
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217994.193693.2903sus_scrofa_wuzhishanENSSSCP0000503773593.112292.2194
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217994.193693.2903sus_scrofa_hampshireENSSSCP0003504690993.112292.2194
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217994.193693.2903sus_scrofa_meishanENSSSCP0004003356793.112292.2194
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217992.903289.1613bos_taurusENSBTAP0000001172991.95488.2503
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217994.193693.2903sus_scrofa_pietrainENSSSCP0005503982093.112292.2194
ENSSSCG00060020934sus_scrofa_jinhuaENSSSCP0006001217994.193693.2903sus_scrofa_largewhiteENSSSCP0002504264793.112292.2194

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression