RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00060020447	Gene ID		Accession	-
Symbol	TAF15	Alias	-	Full Name	NA
Status	Confidence	Length	38325 bases	Strand	Plus strand
Position	LUXY01010518.1 : 402324 - 440648	RNA binding domain	zf-RanBP , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060011872	zf-RanBP	PF00641	1e-06	1
ENSSSCP00060011872	RRM_1	PF00076	4.1e-10	2
ENSSSCP00060011877	zf-RanBP	PF00641	1e-06	1
ENSSSCP00060011877	RRM_1	PF00076	4.2e-10	2
ENSSSCP00060011862	zf-RanBP	PF00641	1.2e-06	1
ENSSSCP00060011880	RRM_1	PF00076	3.7e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TAF15-201	ENSSSCT00060027728	1734	495aa	ENSSSCP00060011862
TAF15-202	ENSSSCT00060027747	2186	600aa	ENSSSCP00060011872
TAF15-203	ENSSSCT00060027753	2098	602aa	ENSSSCP00060011877
TAF15-204	ENSSSCT00060027756	2180	566aa	ENSSSCP00060011880

Gene Model

Click here to download ENSSSCG00060020447's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060020447's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060013782	57.722	51.3514	sus_scrofa_jinhua	ENSSSCP00060011877	49.6678	44.186
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060047732	41.384	32.8358	sus_scrofa_jinhua	ENSSSCP00060011877	50.6645	40.1993

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	76.2458	75.4153	sus_scrofa_usmarc	ENSSSCP00070010351	84.2202	83.3027
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	99.6678	99.6678	sus_scrofa	ENSSSCP00000070444	100	100
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	96.8439	96.3455	equus_caballus	ENSECAP00000000561	91.0938	90.625
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	99.8339	99.8339	sus_scrofa_berkshire	ENSSSCP00065047385	99.8339	99.8339
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	94.8505	94.186	ovis_aries_rambouillet	ENSOARP00020027086	96.6159	95.9391
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	95.6811	95.6811	sus_scrofa_landrace	ENSSSCP00045016288	99.654	99.654
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	99.3355	99.3355	sus_scrofa_bamei	ENSSSCP00050045239	99.8331	99.8331
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	91.196	91.196	sus_scrofa_rongchang	ENSSSCP00030031800	99.4565	99.4565
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	97.01	97.01	sus_scrofa_tibetan	ENSSSCP00015011257	99.6587	99.6587
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	78.4053	78.4053	sus_scrofa_wuzhishan	ENSSSCP00005006760	99.5781	99.5781
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	97.8405	97.8405	sus_scrofa_hampshire	ENSSSCP00035044700	99.8305	99.8305
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	99.8339	99.8339	sus_scrofa_meishan	ENSSSCP00040048481	99.8339	99.8339
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	99.8339	99.8339	sus_scrofa_pietrain	ENSSSCP00055034115	85.1275	85.1275
ENSSSCG00060020447	sus_scrofa_jinhua	ENSSSCP00060011877	89.2027	87.7076	sus_scrofa_largewhite	ENSSSCP00025011817	94.709	93.1217

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression