RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060016324	Gene ID		Accession	-
Symbol	MDM4	Alias	-	Full Name	NA
Status	Confidence	Length	47724 bases	Strand	Plus strand
Position	LUXY01032146.1 : 150675 - 198398	RNA binding domain	zf-RanBP
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060008975	zf-RanBP	PF00641	3.5e-09	1
ENSSSCP00060008991	zf-RanBP	PF00641	5.7e-09	1
ENSSSCP00060008994	zf-RanBP	PF00641	7.7e-09	1
ENSSSCP00060008977	zf-RanBP	PF00641	7.7e-09	1
ENSSSCP00060008981	zf-RanBP	PF00641	7.9e-09	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MDM4-203	ENSSSCT00060021774	653	116aa	ENSSSCP00060008970
MDM4-201	ENSSSCT00060021775	761	152aa	ENSSSCP00060008971
MDM4-202	ENSSSCT00060021779	722	139aa	ENSSSCP00060008972
MDM4-204	ENSSSCT00060021785	4807	268aa	ENSSSCP00060008975
MDM4-206	ENSSSCT00060021788	4409	496aa	ENSSSCP00060008977
MDM4-205	ENSSSCT00060021794	1840	506aa	ENSSSCP00060008981
MDM4-207	ENSSSCT00060021807	8737	154aa	ENSSSCP00060008988
MDM4-208	ENSSSCT00060021814	3119	389aa	ENSSSCP00060008991
MDM4-209	ENSSSCT00060021820	4123	494aa	ENSSSCP00060008994

Gene Model

Click here to download ENSSSCG00060016324's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060016324's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060041594	49.6945	30.3462	sus_scrofa_jinhua	ENSSSCP00060008981	48.2213	29.4466

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	100	100	sus_scrofa_usmarc	ENSSSCP00070034036	100	100
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	100	100	sus_scrofa	ENSSSCP00000016209	100	100
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	94.4664	92.0949	equus_caballus	ENSECAP00000081706	84.3034	82.187
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	100	100	sus_scrofa_berkshire	ENSSSCP00065035341	100	100
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	92.8854	90.1186	ovis_aries_rambouillet	ENSOARP00020006882	95.723	92.8717
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	100	100	sus_scrofa_landrace	ENSSSCP00045044675	100	100
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	97.4308	97.2332	sus_scrofa_bamei	ENSSSCP00050045587	91.4657	91.2802
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	100	100	sus_scrofa_rongchang	ENSSSCP00030030037	100	100
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	100	100	sus_scrofa_tibetan	ENSSSCP00015041816	100	100
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	99.8024	99.8024	sus_scrofa_wuzhishan	ENSSSCP00005015370	99.8024	99.8024
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	100	100	sus_scrofa_hampshire	ENSSSCP00035001997	100	100
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	100	100	sus_scrofa_meishan	ENSSSCP00040016895	100	100
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	92.4901	89.7233	bos_taurus	ENSBTAP00000008209	95.3157	92.4644
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	100	100	sus_scrofa_pietrain	ENSSSCP00055041773	100	100
ENSSSCG00060016324	sus_scrofa_jinhua	ENSSSCP00060008981	100	100	sus_scrofa_largewhite	ENSSSCP00025009237	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression