RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00060013926	Gene ID		Accession	-
Symbol	RPLP1	Alias	-	Full Name	Sus scrofa ribosomal protein lateral stalk subunit P1 (RPLP1), mRNA.
Status	Confidence	Length	2179 bases	Strand	Minus strand
Position	LUXY01031192.1 : 1740788 - 1742966	RNA binding domain	Ribosomal_60s
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060007390	Ribosomal_60s	PF00428	1.9e-26	1
ENSSSCP00060007386	Ribosomal_60s	PF00428	6.7e-16	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPLP1-201	ENSSSCT00060018389	315	89aa	ENSSSCP00060007386
RPLP1-202	ENSSSCT00060018399	524	141aa	ENSSSCP00060007390

Gene Model

Click here to download ENSSSCG00060013926's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060013926's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060024367	26.6667	15.3333	sus_scrofa_jinhua	ENSSSCP00060007390	28.3688	16.3121
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060017078	34.6774	24.1935	sus_scrofa_jinhua	ENSSSCP00060007390	30.4965	21.2766
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060042430	42.6087	31.3043	sus_scrofa_jinhua	ENSSSCP00060007390	34.7518	25.5319
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060031432	11.9122	6.26959	sus_scrofa_jinhua	ENSSSCP00060007390	26.9504	14.1844
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060042754	98.1481	97.2222	sus_scrofa_jinhua	ENSSSCP00060007390	75.1773	74.4681
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060037516	78.9062	71.0938	sus_scrofa_jinhua	ENSSSCP00060007390	71.6312	64.539
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060009385	54.3353	53.1792	sus_scrofa_jinhua	ENSSSCP00060007390	66.6667	65.2482

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	80.8511	80.1418	sus_scrofa_usmarc	ENSSSCP00070010013	100	99.1228
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	80.8511	80.1418	sus_scrofa	ENSSSCP00000005345	100	99.1228
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	78.7234	76.5957	equus_caballus	ENSECAP00000006580	97.3684	94.7368
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	74.4681	72.3404	equus_caballus	ENSECAP00000031656	92.9204	90.2655
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	80.8511	80.1418	sus_scrofa_berkshire	ENSSSCP00065022205	100	99.1228
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	76.5957	74.4681	ovis_aries_rambouillet	ENSOARP00020031580	96.4286	93.75
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	80.1418	78.7234	ovis_aries_rambouillet	ENSOARP00020018641	99.1228	97.3684
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	99.2908	99.2908	sus_scrofa_landrace	ENSSSCP00045020991	99.2908	99.2908
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	66.6667	63.8298	sus_scrofa_bamei	ENSSSCP00050037243	81.7391	78.2609
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	66.6667	63.8298	sus_scrofa_rongchang	ENSSSCP00030006777	81.7391	78.2609
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	66.6667	63.8298	sus_scrofa_tibetan	ENSSSCP00015036106	81.7391	78.2609
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	66.6667	63.8298	sus_scrofa_wuzhishan	ENSSSCP00005044701	81.7391	78.2609
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	80.8511	80.1418	sus_scrofa_hampshire	ENSSSCP00035012293	100	99.1228
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	80.8511	80.1418	sus_scrofa_meishan	ENSSSCP00040044715	100	99.1228
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	80.1418	78.7234	bos_taurus	ENSBTAP00000024376	99.1228	97.3684
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	80.8511	80.1418	sus_scrofa_pietrain	ENSSSCP00055002194	100	99.1228
ENSSSCG00060013926	sus_scrofa_jinhua	ENSSSCP00060007390	65.9574	61.7021	sus_scrofa_largewhite	ENSSSCP00025029880	81.5789	76.3158

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression