RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060011278	Gene ID		Accession	-
Symbol	GTSF1L	Alias	-	Full Name	Sus scrofa gametocyte specific factor 1 like (GTSF1L), mRNA.
Status	Confidence	Length	885 bases	Strand	Plus strand
Position	LUXY01023204.1 : 1247138 - 1248022	RNA binding domain	zf-U11-48K
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060005713	zf-U11-48K	PF05253	3.9e-18	1
ENSSSCP00060005713	zf-U11-48K	PF05253	3.9e-18	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
GTSF1L-201	ENSSSCT00060014708	885	168aa	ENSSSCP00060005713

Gene Model

Click here to download ENSSSCG00060011278's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060011278's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060013901	67.8571	54.4643	sus_scrofa_jinhua	ENSSSCP00060005713	45.2381	36.3095
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060020894	16.6154	9.23077	sus_scrofa_jinhua	ENSSSCP00060005713	32.1429	17.8571
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060013831	41.9162	22.7545	sus_scrofa_jinhua	ENSSSCP00060005713	41.6667	22.619

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa_usmarc	ENSSSCP00070018960	100	100
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa	ENSSSCP00000066490	100	100
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	78.5714	72.619	equus_caballus	ENSECAP00000009066	75.8621	70.1149
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa_berkshire	ENSSSCP00065023190	100	100
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	77.381	73.2143	ovis_aries_rambouillet	ENSOARP00020022657	86.0927	81.457
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa_landrace	ENSSSCP00045047771	100	100
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa_bamei	ENSSSCP00050000333	100	100
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa_rongchang	ENSSSCP00030018887	100	100
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa_tibetan	ENSSSCP00015033614	100	100
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa_wuzhishan	ENSSSCP00005040630	100	100
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa_hampshire	ENSSSCP00035044760	100	100
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa_meishan	ENSSSCP00040030353	100	100
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	80.9524	76.1905	bos_taurus	ENSBTAP00000014919	80.4734	75.7396
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa_pietrain	ENSSSCP00055012015	100	100
ENSSSCG00060011278	sus_scrofa_jinhua	ENSSSCP00060005713	100	100	sus_scrofa_largewhite	ENSSSCP00025035054	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression