RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00060009241	Gene ID		Accession	-
Symbol	SRPRA	Alias	-	Full Name	NA
Status	Confidence	Length	16890 bases	Strand	Plus strand
Position	LUXY01016195.1 : 467784 - 484673	RNA binding domain	SRP54 , SRP54_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060004451	SRP54	PF00448	2.3e-47	1
ENSSSCP00060004451	SRP54_N	PF02881	2.1e-06	2
ENSSSCP00060004453	SRP54	PF00448	2.4e-47	1
ENSSSCP00060004453	SRP54_N	PF02881	7.1e-08	2
ENSSSCP00060004452	SRP54	PF00448	2.5e-47	1
ENSSSCP00060004452	SRP54_N	PF02881	7.1e-08	2
ENSSSCP00060004449	SRP54	PF00448	2.8e-47	1
ENSSSCP00060004449	SRP54_N	PF02881	7.9e-08	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
SRPRA-201	ENSSSCT00060011903	8670	638aa	ENSSSCP00060004449
SRPRA-202	ENSSSCT00060011908	2734	593aa	ENSSSCP00060004451
SRPRA-203	ENSSSCT00060011910	2857	610aa	ENSSSCP00060004452
SRPRA-204	ENSSSCT00060011914	2494	606aa	ENSSSCP00060004453

Gene Model

Click here to download ENSSSCG00060009241's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060009241's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060044962	39.6825	20.0397	sus_scrofa_jinhua	ENSSSCP00060004449	31.348	15.8307

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	98.5893	98.5893	sus_scrofa_usmarc	ENSSSCP00070040263	99.2114	99.2114
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	99.8433	99.8433	sus_scrofa	ENSSSCP00000062693	88.1051	88.1051
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	97.6489	96.395	equus_caballus	ENSECAP00000012625	98.265	97.0032
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	99.8433	99.8433	sus_scrofa_berkshire	ENSSSCP00065022200	88.1051	88.1051
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	97.6489	96.395	ovis_aries_rambouillet	ENSOARP00020009096	95.5521	94.3252
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	100	100	sus_scrofa_landrace	ENSSSCP00045035200	100	100
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	100	100	sus_scrofa_bamei	ENSSSCP00050035463	100	100
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	100	100	sus_scrofa_rongchang	ENSSSCP00030023179	100	100
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	100	100	sus_scrofa_tibetan	ENSSSCP00015024187	100	100
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	99.5298	99.373	sus_scrofa_wuzhishan	ENSSSCP00005001443	99.5298	99.373
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	99.8433	99.8433	sus_scrofa_hampshire	ENSSSCP00035020280	88.1051	88.1051
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	99.6865	99.6865	sus_scrofa_meishan	ENSSSCP00040003960	99.6865	99.6865
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	98.7461	97.4922	bos_taurus	ENSBTAP00000018762	98.5916	97.3396
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	99.8433	99.6865	sus_scrofa_pietrain	ENSSSCP00055028919	88.1051	87.9668
ENSSSCG00060009241	sus_scrofa_jinhua	ENSSSCP00060004449	99.0596	98.5893	sus_scrofa_largewhite	ENSSSCP00025011886	94.1878	93.7407

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression