RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060008675	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1044 bases	Strand	Plus strand
Position	LUXY01034714.1 : 1792028 - 1793071	RNA binding domain	zf-RanBP
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060004120	zf-RanBP	PF00641	2.6e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00060011122	594	197aa	ENSSSCP00060004120

Gene Model

Click here to download ENSSSCG00060008675's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060008675's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060015793	45.7895	43.4211	sus_scrofa_jinhua	ENSSSCP00060004120	88.3249	83.7563
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060028341	10.7843	4.90196	sus_scrofa_jinhua	ENSSSCP00060004120	11.1675	5.07614

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	14.2132	10.6599	sus_scrofa_usmarc	ENSSSCP00070030785	14.6597	10.9948
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	13.7056	10.1523	sus_scrofa_usmarc	ENSSSCP00070009060	14.1361	10.4712
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	12.6904	8.12183	equus_caballus	ENSECAP00000036134	13.4409	8.60215
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	99.4924	97.9695	sus_scrofa_berkshire	ENSSSCP00065048510	99.4924	97.9695
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	63.9594	54.3147	ovis_aries_rambouillet	ENSOARP00020030785	31.8987	27.0886
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	22.8426	15.736	ovis_aries_rambouillet	ENSOARP00020027683	15.7895	10.8772
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	100	98.9848	sus_scrofa_landrace	ENSSSCP00045039303	100	98.9848
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	100	98.9848	sus_scrofa_bamei	ENSSSCP00050005807	100	98.9848
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	100	100	sus_scrofa_rongchang	ENSSSCP00030037285	100	100
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	12.1827	9.13706	sus_scrofa_tibetan	ENSSSCP00015018938	12.766	9.57447
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	93.9086	91.3706	sus_scrofa_wuzhishan	ENSSSCP00005025670	90.6863	88.2353
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	10.6599	7.61421	sus_scrofa_hampshire	ENSSSCP00035025084	12.2093	8.72093
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	100	100	sus_scrofa_meishan	ENSSSCP00040009461	100	100
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	65.9898	55.8376	bos_taurus	ENSBTAP00000055499	32.0988	27.1605
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	63.4518	53.8071	bos_taurus	ENSBTAP00000054523	28.8684	24.4804
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	100	98.9848	sus_scrofa_pietrain	ENSSSCP00055028691	100	98.9848
ENSSSCG00060008675	sus_scrofa_jinhua	ENSSSCP00060004120	97.9695	95.9391	sus_scrofa_largewhite	ENSSSCP00025000464	97.9695	95.9391

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression