RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00060007436	Gene ID		Accession	-
Symbol	SF3B3	Alias	-	Full Name	NA
Status	Confidence	Length	54141 bases	Strand	Plus strand
Position	LUXY01000756.1 : 1751260 - 1805400	RNA binding domain	CPSF_A
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00060003459	CPSF_A	PF03178	1.4e-101	1
ENSSSCP00060003463	CPSF_A	PF03178	1.4e-89	1
ENSSSCP00060003470	CPSF_A	PF03178	1e-79	1
ENSSSCP00060003462	CPSF_A	PF03178	7e-14	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
SF3B3-201	ENSSSCT00060009473	4928	1217aa	ENSSSCP00060003459
SF3B3-202	ENSSSCT00060009479	5881	962aa	ENSSSCP00060003462
SF3B3-203	ENSSSCT00060009485	3653	1161aa	ENSSSCP00060003463
SF3B3-204	ENSSSCT00060009502	3554	1128aa	ENSSSCP00060003470

Gene Model

Click here to download ENSSSCG00060007436's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00060007436's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060044818	41.09	22.7509	sus_scrofa_jinhua	ENSSSCP00060003459	39.0304	21.6105
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060008762	39	17.5	sus_scrofa_jinhua	ENSSSCP00060003459	6.4092	2.87592

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	94.659	94.659	sus_scrofa_usmarc	ENSSSCP00070004504	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	98.0279	98.0279	sus_scrofa	ENSSSCP00000027087	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	100	equus_caballus	ENSECAP00000011754	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	100	sus_scrofa_berkshire	ENSSSCP00065040200	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	100	ovis_aries_rambouillet	ENSOARP00020019681	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	100	sus_scrofa_landrace	ENSSSCP00045023253	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	100	sus_scrofa_bamei	ENSSSCP00050044981	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	100	sus_scrofa_rongchang	ENSSSCP00030030080	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	100	sus_scrofa_tibetan	ENSSSCP00015041168	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	100	sus_scrofa_wuzhishan	ENSSSCP00005026341	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	100	sus_scrofa_hampshire	ENSSSCP00035025946	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	100	sus_scrofa_meishan	ENSSSCP00040007291	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	99.9178	bos_taurus	ENSBTAP00000014050	100	99.9178
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	93.3443	93.3443	sus_scrofa_pietrain	ENSSSCP00055002164	100	100
ENSSSCG00060007436	sus_scrofa_jinhua	ENSSSCP00060003459	100	100	sus_scrofa_largewhite	ENSSSCP00025003507	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression