| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00055030586 | Gene ID |
|
Accession |
- |
| Symbol |
RBFOX3 |
Alias |
- |
Full Name |
NA |
| Status |
Confidence |
Length |
429146 bases |
Strand |
Minus strand |
| Position |
LUXU01037897.1 : 411371 - 840516 |
RNA binding domain |
Fox-1_C , RRM_1 |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00055048872 |
Fox-1_C |
PF12414 |
1.4e-46 |
1 |
| ENSSSCP00055048872 |
RRM_1 |
PF00076 |
2.1e-18 |
2 |
| ENSSSCP00055048852 |
Fox-1_C |
PF12414 |
1.7e-46 |
1 |
| ENSSSCP00055048852 |
RRM_1 |
PF00076 |
2.4e-18 |
2 |
| ENSSSCP00055048888 |
Fox-1_C |
PF12414 |
2e-46 |
1 |
| ENSSSCP00055048888 |
RRM_1 |
PF00076 |
1.4e-18 |
2 |
| ENSSSCP00055048867 |
Fox-1_C |
PF12414 |
1.5e-42 |
1 |
| ENSSSCP00055048867 |
RRM_1 |
PF00076 |
0.00062 |
2 |
| ENSSSCP00055048913 |
Fox-1_C |
PF12414 |
2e-42 |
1 |
| ENSSSCP00055048913 |
RRM_1 |
PF00076 |
1.4e-18 |
2 |
| ENSSSCP00055048897 |
Fox-1_C |
PF12414 |
7.6e-22 |
1 |
| ENSSSCP00055048897 |
RRM_1 |
PF00076 |
1.3e-18 |
2 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| RBFOX3-201 |
ENSSSCT00055060938 |
2445 |
341aa |
ENSSSCP00055048852 |
| RBFOX3-205 |
ENSSSCT00055060954 |
1771 |
329aa |
ENSSSCP00055048867 |
| RBFOX3-204 |
ENSSSCT00055060960 |
1749 |
313aa |
ENSSSCP00055048872 |
| RBFOX3-203 |
ENSSSCT00055060979 |
4966 |
372aa |
ENSSSCP00055048888 |
| RBFOX3-202 |
ENSSSCT00055060988 |
1131 |
310aa |
ENSSSCP00055048897 |
| RBFOX3-206 |
ENSSSCT00055061008 |
3445 |
374aa |
ENSSSCP00055048913 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055008520 | 54.2222 | 49.5556 | sus_scrofa_pietrain | ENSSSCP00055048913 | 65.2406 | 59.6257 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055010897 | 53.4335 | 49.3562 | sus_scrofa_pietrain | ENSSSCP00055048913 | 66.5775 | 61.4973 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 100 | 100 | sus_scrofa_largewhite | ENSSSCP00025035696 | 100 | 100 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 84.2246 | 84.2246 | sus_scrofa | ENSSSCP00000033058 | 84.9057 | 84.9057 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 98.1283 | 97.5936 | equus_caballus | ENSECAP00000067173 | 81.9196 | 81.4732 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 84.492 | 84.492 | sus_scrofa_berkshire | ENSSSCP00065030547 | 84.9462 | 84.9462 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 93.8503 | 93.8503 | sus_scrofa_tibetan | ENSSSCP00015024627 | 97.5 | 97.5 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 97.0588 | 97.0588 | sus_scrofa_usmarc | ENSSSCP00070028826 | 73.9308 | 73.9308 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 86.3636 | 85.8289 | ovis_aries_rambouillet | ENSOARP00020015771 | 98.4756 | 97.8659 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 78.0749 | 76.738 | bos_taurus | ENSBTAP00000008240 | 78.9189 | 77.5676 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 76.2032 | 76.2032 | sus_scrofa_wuzhishan | ENSSSCP00005032827 | 79.3872 | 79.3872 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 96.2567 | 96.2567 | sus_scrofa_meishan | ENSSSCP00040030534 | 71.5706 | 71.5706 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 100 | 100 | sus_scrofa_bamei | ENSSSCP00050024781 | 100 | 100 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 100 | 100 | sus_scrofa_jinhua | ENSSSCP00060037128 | 100 | 100 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 95.9893 | 95.9893 | sus_scrofa_landrace | ENSSSCP00045035512 | 99.7222 | 99.7222 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 100 | 100 | sus_scrofa_hampshire | ENSSSCP00035046029 | 100 | 100 |
| ENSSSCG00055030586 | sus_scrofa_pietrain | ENSSSCP00055048913 | 84.492 | 84.492 | sus_scrofa_rongchang | ENSSSCP00030004550 | 84.9462 | 84.9462 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
