RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055029677	Gene ID		Accession	-
Symbol	PSMA6	Alias	-	Full Name	Sus scrofa proteasome 20S subunit alpha 6 (PSMA6), mRNA.
Status	Confidence	Length	185279 bases	Strand	Minus strand
Position	LUXU01037967.1 : 2328594 - 2513872	RNA binding domain	PRORP
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055047306	PRORP	PF16953	8.6e-104	1
ENSSSCP00055047382	PRORP	PF16953	1.8e-103	1
ENSSSCP00055047362	PRORP	PF16953	7.1e-100	1
ENSSSCP00055047404	PRORP	PF16953	5.6e-81	1
ENSSSCP00055047404	PRORP	PF16953	5.6e-81	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PSMA6-201	ENSSSCT00055058994	995	246aa	ENSSSCP00055047258
PSMA6-202	ENSSSCT00055059022	1098	240aa	ENSSSCP00055047278
PSMA6-203	ENSSSCT00055059053	3119	835aa	ENSSSCP00055047306
PSMA6-204	ENSSSCT00055059064	846	250aa	ENSSSCP00055047316
PSMA6-205	ENSSSCT00055059124	2555	656aa	ENSSSCP00055047362
PSMA6-206	ENSSSCT00055059153	2633	567aa	ENSSSCP00055047382
PSMA6-207	ENSSSCT00055059168	1790	385aa	ENSSSCP00055047394
PSMA6-208	ENSSSCT00055059186	2555	547aa	ENSSSCP00055047404

Gene Model

Click here to download ENSSSCG00055029677's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055029677's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055029677

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	100	100	sus_scrofa_largewhite	ENSSSCP00025041050	100	100
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	69.5808	69.4611	sus_scrofa	ENSSSCP00000002131	99.6569	99.4854
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	62.994	58.2036	equus_caballus	ENSECAP00000026481	92.4429	85.413
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	100	100	sus_scrofa_berkshire	ENSSSCP00065036544	100	100
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	46.3473	45.8683	sus_scrofa_tibetan	ENSSSCP00015011551	99.4859	98.4576
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	74.6108	73.5329	sus_scrofa_usmarc	ENSSSCP00070011655	94.9695	93.5976
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	66.7066	61.3174	ovis_aries_rambouillet	ENSOARP00020008869	91.3115	83.9344
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	65.2695	60.8383	bos_taurus	ENSBTAP00000063712	93.3219	86.9863
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	100	99.8802	sus_scrofa_wuzhishan	ENSSSCP00005043890	100	99.8802
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	100	100	sus_scrofa_meishan	ENSSSCP00040022492	100	100
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	99.8802	99.4012	sus_scrofa_bamei	ENSSSCP00050003603	99.8802	99.4012
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	100	100	sus_scrofa_jinhua	ENSSSCP00060043124	100	100
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	100	100	sus_scrofa_landrace	ENSSSCP00045011579	100	100
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	100	100	sus_scrofa_hampshire	ENSSSCP00035042901	100	100
ENSSSCG00055029677	sus_scrofa_pietrain	ENSSSCP00055047306	100	99.8802	sus_scrofa_rongchang	ENSSSCP00030037970	100	99.8802

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression