RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055028356	Gene ID	100525087	Accession	-
Symbol	CNOT8	Alias	-	Full Name	CCR4-NOT transcription complex subunit 8
Status	Confidence	Length	20822 bases	Strand	Plus strand
Position	LUXU01058405.1 : 1527145 - 1547966	RNA binding domain	CAF1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055045050	CAF1	PF04857	1.7e-22	1
ENSSSCP00055045050	CAF1	PF04857	1.7e-22	2
ENSSSCP00055045090	CAF1	PF04857	6.2e-19	1
ENSSSCP00055045090	CAF1	PF04857	6.2e-19	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
CNOT8-201	ENSSSCT00055056383	2568	292aa	ENSSSCP00055045050
CNOT8-202	ENSSSCT00055056429	717	238aa	ENSSSCP00055045090

Gene Model

Click here to download ENSSSCG00055028356's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055028356's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055021205	88.7719	75.4386	sus_scrofa_pietrain	ENSSSCP00055045050	86.6438	73.6301

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	98.6301	98.6301	sus_scrofa_largewhite	ENSSSCP00025038395	94.1176	94.1176
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	sus_scrofa	ENSSSCP00000018082	100	100
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	87.3288	85.274	equus_caballus	ENSECAP00000055478	85.2843	83.2776
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	sus_scrofa_berkshire	ENSSSCP00065008272	100	100
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	98.6301	98.6301	sus_scrofa_tibetan	ENSSSCP00015006692	94.1176	94.1176
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	sus_scrofa_usmarc	ENSSSCP00070019871	100	100
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	ovis_aries_rambouillet	ENSOARP00020025313	100	100
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	bos_taurus	ENSBTAP00000016027	100	100
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	sus_scrofa_wuzhishan	ENSSSCP00005020043	100	100
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	sus_scrofa_meishan	ENSSSCP00040024505	100	100
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	sus_scrofa_bamei	ENSSSCP00050011366	100	100
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	sus_scrofa_jinhua	ENSSSCP00060001514	100	100
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	sus_scrofa_landrace	ENSSSCP00045014028	100	100
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	sus_scrofa_hampshire	ENSSSCP00035008618	100	100
ENSSSCG00055028356	sus_scrofa_pietrain	ENSSSCP00055045050	100	100	sus_scrofa_rongchang	ENSSSCP00030019969	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression