RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055027723	Gene ID		Accession	-
Symbol	POLR2C	Alias	-	Full Name	NA
Status	Confidence	Length	7726 bases	Strand	Minus strand
Position	LUXU01043433.1 : 794760 - 802485	RNA binding domain	RNA_pol_A_bac , RNA_pol_L
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055043796	RNA_pol_A_bac	PF01000	7.5e-40	1
ENSSSCP00055043796	RNA_pol_L	PF01193	1.6e-06	2
ENSSSCP00055043752	RNA_pol_A_bac	PF01000	8.3e-40	1
ENSSSCP00055043752	RNA_pol_L	PF01193	4.9e-17	2
ENSSSCP00055043815	RNA_pol_A_bac	PF01000	1.3e-39	1
ENSSSCP00055043815	RNA_pol_L	PF01193	3.8e-13	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
POLR2C-203	ENSSSCT00055054835	1664	275aa	ENSSSCP00055043752
POLR2C-202	ENSSSCT00055054882	1587	275aa	ENSSSCP00055043796
POLR2C-201	ENSSSCT00055054906	1671	303aa	ENSSSCP00055043815

Gene Model

Click here to download ENSSSCG00055027723's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055027723's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055035311	38.7464	21.9373	sus_scrofa_pietrain	ENSSSCP00055043815	44.8845	25.4125

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	84.8185	83.1683	sus_scrofa_largewhite	ENSSSCP00025041366	93.4545	91.6364
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	84.8185	83.1683	sus_scrofa	ENSSSCP00000021748	93.4545	91.6364
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	67.3267	62.3762	equus_caballus	ENSECAP00000071905	72.0848	66.7845
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	84.8185	83.1683	sus_scrofa_berkshire	ENSSSCP00065043028	93.4545	91.6364
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	99.67	99.3399	sus_scrofa_tibetan	ENSSSCP00015025579	99.67	99.3399
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	84.8185	83.1683	sus_scrofa_usmarc	ENSSSCP00070034557	93.4545	91.6364
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	84.8185	82.8383	ovis_aries_rambouillet	ENSOARP00020004509	93.4545	91.2727
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	84.8185	82.8383	bos_taurus	ENSBTAP00000002420	93.4545	91.2727
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	84.8185	83.1683	sus_scrofa_wuzhishan	ENSSSCP00005034924	93.4545	91.6364
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	100	100	sus_scrofa_meishan	ENSSSCP00040004808	100	100
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	100	100	sus_scrofa_bamei	ENSSSCP00050019293	100	100
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	84.8185	83.1683	sus_scrofa_jinhua	ENSSSCP00060046612	93.4545	91.6364
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	100	100	sus_scrofa_landrace	ENSSSCP00045031713	100	100
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	65.0165	61.7162	sus_scrofa_hampshire	ENSSSCP00035016815	66.5541	63.1757
ENSSSCG00055027723	sus_scrofa_pietrain	ENSSSCP00055043815	100	100	sus_scrofa_rongchang	ENSSSCP00030041963	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression