Description

Ensembl ID ENSSSCG00055022380 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 33977 bases Strand Plus strand
Position LUXU01084577.1 : 2813595 - 2847571 RNA binding domain RNA_pol_A_bac , RNA_pol_L
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00055034990 RNA_pol_A_bac PF01000 4.7e-29 1
ENSSSCP00055034990 RNA_pol_L PF01193 1e-23 2
ENSSSCP00055035401 RNA_pol_A_bac PF01000 5.3e-29 1
ENSSSCP00055035401 RNA_pol_L PF01193 1.3e-23 2
ENSSSCP00055035522 RNA_pol_A_bac PF01000 5.5e-29 1
ENSSSCP00055035522 RNA_pol_L PF01193 7.5e-12 2
ENSSSCP00055035760 RNA_pol_A_bac PF01000 6.1e-29 1
ENSSSCP00055035760 RNA_pol_L PF01193 1.5e-23 2
ENSSSCP00055035311 RNA_pol_A_bac PF01000 6.9e-29 1
ENSSSCP00055035311 RNA_pol_L PF01193 1.9e-23 2
ENSSSCP00055035656 RNA_pol_A_bac PF01000 5.2e-26 1
ENSSSCP00055035656 RNA_pol_L PF01193 1.2e-23 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00055043935 1238 291aa ENSSSCP00055034990
- ENSSSCT00055044316 5624 351aa ENSSSCP00055035311
- ENSSSCT00055044425 1316 310aa ENSSSCP00055035401
- ENSSSCT00055044579 933 311aa ENSSSCP00055035522
- ENSSSCT00055044746 891 296aa ENSSSCP00055035656
- ENSSSCT00055044887 999 332aa ENSSSCP00055035760

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005504381544.884525.4125sus_scrofa_pietrainENSSSCP0005503531138.746421.9373

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531187.749386.0399sus_scrofa_largewhiteENSSSCP0002501987292.771190.9639
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531199.145399.1453sus_scrofaENSSSCP0000006538299.145399.1453
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531193.732290.3134equus_caballusENSECAP0000007057871.521768.913
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531199.715199.7151sus_scrofa_berkshireENSSSCP0006504735399.715199.7151
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531199.715199.7151sus_scrofa_tibetanENSSSCP0001500930399.715199.7151
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531199.715199.7151sus_scrofa_usmarcENSSSCP0007003754299.715199.7151
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531196.581295.1567ovis_aries_rambouilletENSOARP0002002865197.976996.5318
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531196.866195.1567bos_taurusENSBTAP0000002524698.265996.5318
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531199.715199.7151sus_scrofa_wuzhishanENSSSCP0000503185999.715199.7151
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531199.145399.1453sus_scrofa_meishanENSSSCP0004001172999.145399.1453
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531187.749386.0399sus_scrofa_bameiENSSSCP0005000147392.771190.9639
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531187.179585.4701sus_scrofa_jinhuaENSSSCP0006001787092.168790.3614
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531187.749386.0399sus_scrofa_landraceENSSSCP0004503344392.771190.9639
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531199.715199.7151sus_scrofa_hampshireENSSSCP0003504140699.715199.7151
ENSSSCG00055022380sus_scrofa_pietrainENSSSCP0005503531193.732293.1624sus_scrofa_rongchangENSSSCP0003003715097.626197.0326

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression