RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055020031	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	8179 bases	Strand	Plus strand
Position	LUXU01055876.1 : 355638 - 363816	RNA binding domain	ECR1_N , EXOSC1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055031182	ECR1_N	PF14382	3.2e-09	1
ENSSSCP00055031182	EXOSC1	PF10447	9.2e-15	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00055039213	2425	195aa	ENSSSCP00055031182

Gene Model

Click here to download ENSSSCG00055020031's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055020031's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055020031

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	100	sus_scrofa_largewhite	ENSSSCP00025045057	76.4706	76.4706
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	94.8718	94.359	sus_scrofa	ENSSSCP00000064588	94.8718	94.359
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	85.641	81.5385	equus_caballus	ENSECAP00000049847	78.0374	74.2991
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	100	sus_scrofa_berkshire	ENSSSCP00065009766	76.4706	76.4706
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	100	sus_scrofa_tibetan	ENSSSCP00015012458	76.4706	76.4706
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	100	sus_scrofa_usmarc	ENSSSCP00070025766	91.1215	91.1215
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	98.9744	97.4359	ovis_aries_rambouillet	ENSOARP00020021980	98.9744	97.4359
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	98.4615	bos_taurus	ENSBTAP00000016879	100	98.4615
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	100	sus_scrofa_wuzhishan	ENSSSCP00005046842	76.4706	76.4706
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	100	sus_scrofa_meishan	ENSSSCP00040023105	100	100
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	100	sus_scrofa_bamei	ENSSSCP00050041236	76.4706	76.4706
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	100	sus_scrofa_jinhua	ENSSSCP00060019456	76.4706	76.4706
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	100	sus_scrofa_landrace	ENSSSCP00045006450	76.4706	76.4706
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	100	sus_scrofa_hampshire	ENSSSCP00035009727	100	100
ENSSSCG00055020031	sus_scrofa_pietrain	ENSSSCP00055031182	100	100	sus_scrofa_rongchang	ENSSSCP00030019484	76.4706	76.4706

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression