RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055019982	Gene ID	100518066	Accession	-
Symbol		Alias	-	Full Name	RNA polymerase I subunit A
Status	Confidence	Length	82540 bases	Strand	Plus strand
Position	LUXU01063750.1 : 1401044 - 1483583	RNA binding domain	RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055031454	RNA_pol_Rpb1_4	PF05000	3.3e-25	1
ENSSSCP00055031454	RNA_pol_Rpb1_5	PF04998	2.3e-103	2
ENSSSCP00055031454	RNA_pol_Rpb1_2	PF00623	4e-70	3
ENSSSCP00055031454	RNA_pol_Rpb1_3	PF04983	2.9e-36	4
ENSSSCP00055031643	RNA_pol_Rpb1_4	PF05000	3.3e-25	1
ENSSSCP00055031643	RNA_pol_Rpb1_5	PF04998	2.3e-103	2
ENSSSCP00055031643	RNA_pol_Rpb1_2	PF00623	4e-70	3
ENSSSCP00055031643	RNA_pol_Rpb1_3	PF04983	2.9e-36	4
ENSSSCP00055031152	RNA_pol_Rpb1_4	PF05000	3.6e-25	1
ENSSSCP00055031152	RNA_pol_Rpb1_1	PF04997	8.5e-22	2
ENSSSCP00055031152	RNA_pol_Rpb1_5	PF04998	2.7e-103	3
ENSSSCP00055031152	RNA_pol_Rpb1_2	PF00623	4.4e-70	4
ENSSSCP00055031152	RNA_pol_Rpb1_3	PF04983	3.3e-36	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00055039176	6111	1721aa	ENSSSCP00055031152
-	ENSSSCT00055039538	6241	1613aa	ENSSSCP00055031454
-	ENSSSCT00055039782	6209	1613aa	ENSSSCP00055031643

Gene Model

Click here to download ENSSSCG00055019982's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055019982's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055046879	47.7175	29.8859	sus_scrofa_pietrain	ENSSSCP00055031152	38.8727	24.3463
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055021233	35.9391	22.0812	sus_scrofa_pietrain	ENSSSCP00055031152	41.1389	25.276

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	99.9419	99.8838	sus_scrofa_largewhite	ENSSSCP00025047405	100	99.9419
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	99.9419	99.9419	sus_scrofa	ENSSSCP00000008782	100	100
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	95.8745	92.3881	equus_caballus	ENSECAP00000008753	95.9302	92.4419
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	95.8745	92.3881	equus_caballus	ENSECAP00000040001	94.9914	91.5371
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	95.8745	92.3881	equus_caballus	ENSECAP00000063110	93.3786	89.983
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	99.9419	99.9419	sus_scrofa_berkshire	ENSSSCP00065023495	100	100
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	99.8838	99.8838	sus_scrofa_tibetan	ENSSSCP00015018454	99.9419	99.9419
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	99.5933	99.5933	sus_scrofa_usmarc	ENSSSCP00070049504	99.9417	99.9417
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	94.4799	90.645	ovis_aries_rambouillet	ENSOARP00020004828	96.5558	92.6366
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	96.1069	92.33	bos_taurus	ENSBTAP00000008496	96.3308	92.5451
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	96.2231	96.165	sus_scrofa_wuzhishan	ENSSSCP00005020992	99.1023	99.0425
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	100	100	sus_scrofa_meishan	ENSSSCP00040000216	100	100
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	99.8838	99.8838	sus_scrofa_bamei	ENSSSCP00050012223	99.9419	99.9419
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	99.8838	99.8838	sus_scrofa_jinhua	ENSSSCP00060029230	99.9419	99.9419
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	100	100	sus_scrofa_landrace	ENSSSCP00045033288	100	100
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	99.8838	99.8257	sus_scrofa_hampshire	ENSSSCP00035000143	99.9419	99.8837
ENSSSCG00055019982	sus_scrofa_pietrain	ENSSSCP00055031152	100	100	sus_scrofa_rongchang	ENSSSCP00030005804	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression