RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055019146	Gene ID		Accession	-
Symbol	ZC3H14	Alias	-	Full Name	NA
Status	Confidence	Length	49749 bases	Strand	Plus strand
Position	LUXU01053184.1 : 116050 - 165798	RNA binding domain	zf-CCCH_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055030931	zf-CCCH_2	PF14608	2e-18	1
ENSSSCP00055030931	zf-CCCH_2	PF14608	2e-18	2
ENSSSCP00055030931	zf-CCCH_2	PF14608	2e-18	3
ENSSSCP00055030931	zf-CCCH_2	PF14608	2e-18	4
ENSSSCP00055030931	zf-CCCH_2	PF14608	2e-18	5
ENSSSCP00055030660	zf-CCCH_2	PF14608	3e-17	1
ENSSSCP00055030660	zf-CCCH_2	PF14608	3e-17	2
ENSSSCP00055030660	zf-CCCH_2	PF14608	3e-17	3
ENSSSCP00055030660	zf-CCCH_2	PF14608	3e-17	4
ENSSSCP00055030660	zf-CCCH_2	PF14608	3e-17	5
ENSSSCP00055030830	zf-CCCH_2	PF14608	3.5e-17	1
ENSSSCP00055030830	zf-CCCH_2	PF14608	3.5e-17	2
ENSSSCP00055030830	zf-CCCH_2	PF14608	3.5e-17	3
ENSSSCP00055030830	zf-CCCH_2	PF14608	3.5e-17	4
ENSSSCP00055030830	zf-CCCH_2	PF14608	3.5e-17	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
ZC3H14-201	ENSSSCT00055038577	5863	710aa	ENSSSCP00055030660
ZC3H14-202	ENSSSCT00055038787	2184	727aa	ENSSSCP00055030830
ZC3H14-203	ENSSSCT00055038900	4984	440aa	ENSSSCP00055030931

Gene Model

Click here to download ENSSSCG00055019146's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055019146's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055019146

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	98.2118	97.9367	sus_scrofa_largewhite	ENSSSCP00025002038	97.1429	96.8708
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	98.2118	97.9367	sus_scrofa	ENSSSCP00000054038	97.0109	96.7391
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	96.6988	93.8102	equus_caballus	ENSECAP00000033388	95.5163	92.663
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	98.2118	97.9367	sus_scrofa_berkshire	ENSSSCP00065026147	97.1429	96.8708
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	100	100	sus_scrofa_tibetan	ENSSSCP00015032669	100	100
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	98.2118	97.9367	sus_scrofa_usmarc	ENSSSCP00070007585	97.1429	96.8708
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	51.3067	48.2806	ovis_aries_rambouillet	ENSOARP00020023846	93.9547	88.4131
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	52.9574	51.1692	ovis_aries_rambouillet	ENSOARP00020023364	96.9773	93.7028
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	52.132	50.2063	ovis_aries_rambouillet	ENSOARP00020026127	93.1204	89.6806
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	94.773	91.6094	ovis_aries_rambouillet	ENSOARP00020017672	93.6141	90.4891
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	90.6465	85.0069	bos_taurus	ENSBTAP00000074037	86.1438	80.7843
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	100	100	sus_scrofa_wuzhishan	ENSSSCP00005026485	100	100
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	100	100	sus_scrofa_meishan	ENSSSCP00040005774	100	100
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	98.2118	97.9367	sus_scrofa_bamei	ENSSSCP00050005367	97.1429	96.8708
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	100	100	sus_scrofa_jinhua	ENSSSCP00060012101	100	100
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	100	100	sus_scrofa_landrace	ENSSSCP00045002303	100	100
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	98.2118	97.9367	sus_scrofa_hampshire	ENSSSCP00035017284	97.1429	96.8708
ENSSSCG00055019146	sus_scrofa_pietrain	ENSSSCP00055030830	99.8624	99.8624	sus_scrofa_rongchang	ENSSSCP00030046980	99.8624	99.8624

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression