RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055018312	Gene ID		Accession	-
Symbol	PNLDC1	Alias	-	Full Name	NA
Status	Confidence	Length	18733 bases	Strand	Minus strand
Position	LUXU01035965.1 : 1540409 - 1559141	RNA binding domain	CAF1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055028769	CAF1	PF04857	3.5e-76	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PNLDC1-201	ENSSSCT00055036226	1596	531aa	ENSSSCP00055028769

Gene Model

Click here to download ENSSSCG00055018312's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055018312's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055000328	34.5455	20.5594	sus_scrofa_pietrain	ENSSSCP00055028769	46.516	27.6836
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055001413	25.5121	14.8976	sus_scrofa_pietrain	ENSSSCP00055028769	25.8004	15.0659

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	100	100	sus_scrofa_largewhite	ENSSSCP00025025452	100	100
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	100	100	sus_scrofa	ENSSSCP00000004372	100	100
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	96.4218	92.6554	equus_caballus	ENSECAP00000044818	96.4218	92.6554
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	100	100	sus_scrofa_berkshire	ENSSSCP00065029349	100	100
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	100	99.8117	sus_scrofa_tibetan	ENSSSCP00015018707	100	99.8117
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	100	100	sus_scrofa_usmarc	ENSSSCP00070045814	100	100
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	95.4802	90.5838	ovis_aries_rambouillet	ENSOARP00020008283	96.3878	91.4449
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	93.2203	88.3239	bos_taurus	ENSBTAP00000020180	93.5728	88.6578
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	99.8117	99.6234	sus_scrofa_wuzhishan	ENSSSCP00005017212	99.8117	99.6234
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	74.0113	73.823	sus_scrofa_meishan	ENSSSCP00040008246	93.5714	93.3333
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	72.1281	70.8098	sus_scrofa_jinhua	ENSSSCP00060010577	88.2488	86.6359
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	100	100	sus_scrofa_landrace	ENSSSCP00045020725	100	100
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	100	100	sus_scrofa_hampshire	ENSSSCP00035034900	100	100
ENSSSCG00055018312	sus_scrofa_pietrain	ENSSSCP00055028769	82.1092	80.6026	sus_scrofa_rongchang	ENSSSCP00030033003	88.2591	86.6397

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression