RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055018263	Gene ID	110260627	Accession	-
Symbol	TOB2	Alias	-	Full Name	transducer of ERBB2, 2
Status	Confidence	Length	12047 bases	Strand	Minus strand
Position	LUXU01078254.1 : 1427375 - 1439421	RNA binding domain	PAM2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055028372	PAM2	PF07145	6.2e-12	1
ENSSSCP00055028372	PAM2	PF07145	6.2e-12	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TOB2-201	ENSSSCT00055035722	4999	353aa	ENSSSCP00055028372

Gene Model

Click here to download ENSSSCG00055018263's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055018263's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055038114	71.6763	58.6705	sus_scrofa_pietrain	ENSSSCP00055028372	70.255	57.5071

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	100	100	sus_scrofa_largewhite	ENSSSCP00025006485	100	100
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	100	100	sus_scrofa	ENSSSCP00000055658	100	100
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	93.4844	91.2181	equus_caballus	ENSECAP00000055317	95.6522	93.3333
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	99.7167	99.7167	sus_scrofa_berkshire	ENSSSCP00065012513	99.7167	99.7167
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	92.6346	92.6346	sus_scrofa_tibetan	ENSSSCP00015005784	98.7915	98.7915
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	42.4929	39.9433	sus_scrofa_usmarc	ENSSSCP00070048367	81.5217	76.6304
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	94.051	92.068	ovis_aries_rambouillet	ENSOARP00020031670	96.2319	94.2029
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	94.3343	92.3513	bos_taurus	ENSBTAP00000020105	96.5217	94.4928
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	75.6374	75.6374	sus_scrofa_wuzhishan	ENSSSCP00005002616	100	100
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	100	100	sus_scrofa_meishan	ENSSSCP00040010677	100	100
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	100	100	sus_scrofa_bamei	ENSSSCP00050029125	100	100
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	100	100	sus_scrofa_jinhua	ENSSSCP00060030742	100	100
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	100	100	sus_scrofa_landrace	ENSSSCP00045037174	100	100
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	100	100	sus_scrofa_hampshire	ENSSSCP00035026686	100	100
ENSSSCG00055018263	sus_scrofa_pietrain	ENSSSCP00055028372	100	100	sus_scrofa_rongchang	ENSSSCP00030004026	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression