RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055016046	Gene ID		Accession	-
Symbol	APOBEC1	Alias	-	Full Name	NA
Status	Confidence	Length	9287 bases	Strand	Minus strand
Position	LUXU01077907.1 : 807265 - 816551	RNA binding domain	APOBEC_N , APOBEC_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055025161	APOBEC_N	PF08210	5.7e-31	1
ENSSSCP00055025161	APOBEC_C	PF05240	4.9e-22	2
ENSSSCP00055025184	APOBEC_N	PF08210	7.9e-31	1
ENSSSCP00055025184	APOBEC_C	PF05240	6.3e-22	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
APOBEC1-202	ENSSSCT00055031615	2150	236aa	ENSSSCP00055025161
APOBEC1-201	ENSSSCT00055031646	2203	263aa	ENSSSCP00055025184

Gene Model

Click here to download ENSSSCG00055016046's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055016046's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025086	41.1168	26.9036	sus_scrofa_pietrain	ENSSSCP00055025184	30.7985	20.1521
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055018929	22.9665	12.4402	sus_scrofa_pietrain	ENSSSCP00055025184	36.5019	19.7719
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055019876	35.7143	19.6429	sus_scrofa_pietrain	ENSSSCP00055025184	30.4183	16.73

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	100	100	sus_scrofa_largewhite	ENSSSCP00025008260	100	100
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	87.8327	87.4525	sus_scrofa	ENSSSCP00000000709	97.8814	97.4576
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	78.7072	72.2433	equus_caballus	ENSECAP00000037510	87.7119	80.5085
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	88.9734	88.2129	sus_scrofa_berkshire	ENSSSCP00065023354	99.1525	98.3051
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	87.8327	87.4525	sus_scrofa_tibetan	ENSSSCP00015042042	97.8814	97.4576
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	88.9734	88.5932	sus_scrofa_usmarc	ENSSSCP00070021446	99.1525	98.7288
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	73.0038	65.7795	ovis_aries_rambouillet	ENSOARP00020010951	83.8428	75.5459
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	77.9468	68.4411	bos_taurus	ENSBTAP00000019544	86.8644	76.2712
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	87.8327	87.4525	sus_scrofa_wuzhishan	ENSSSCP00005045154	97.8814	97.4576
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	87.8327	87.4525	sus_scrofa_meishan	ENSSSCP00040037015	97.8814	97.4576
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	87.4525	87.0722	sus_scrofa_jinhua	ENSSSCP00060030725	97.4576	97.0339
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	88.2129	87.4525	sus_scrofa_landrace	ENSSSCP00045037161	98.3051	97.4576
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	88.9734	88.5932	sus_scrofa_hampshire	ENSSSCP00035031970	99.1525	98.7288
ENSSSCG00055016046	sus_scrofa_pietrain	ENSSSCP00055025184	88.5932	88.2129	sus_scrofa_rongchang	ENSSSCP00030021656	98.7288	98.3051

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression