RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00055015989	Gene ID		Accession	-
Symbol	AICDA	Alias	-	Full Name	NA
Status	Confidence	Length	10009 bases	Strand	Plus strand
Position	LUXU01077907.1 : 773692 - 783700	RNA binding domain	APOBEC_N , APOBEC_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055025086	APOBEC_N	PF08210	8.1e-63	1
ENSSSCP00055025086	APOBEC_C	PF05240	1.7e-27	2
ENSSSCP00055025062	APOBEC_N	PF08210	3.3e-46	1
ENSSSCP00055025062	APOBEC_C	PF05240	7.7e-10	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
AICDA-201	ENSSSCT00055031476	2291	185aa	ENSSSCP00055025062
AICDA-202	ENSSSCT00055031510	2951	197aa	ENSSSCP00055025086

Gene Model

Click here to download ENSSSCG00055015989's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055015989's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025184	30.7985	20.1521	sus_scrofa_pietrain	ENSSSCP00055025086	41.1168	26.9036
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055018929	27.0335	17.2249	sus_scrofa_pietrain	ENSSSCP00055025086	57.3604	36.5482
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055019876	40.1786	27.6786	sus_scrofa_pietrain	ENSSSCP00055025086	45.6853	31.4721

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	100	100	sus_scrofa_largewhite	ENSSSCP00025008224	100	100
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	98.9848	98.9848	sus_scrofa	ENSSSCP00000000708	98.4848	98.4848
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	79.6954	73.6041	equus_caballus	ENSECAP00000089291	66.2447	61.1814
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	98.9848	98.9848	sus_scrofa_berkshire	ENSSSCP00065023294	98.4848	98.4848
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	100	100	sus_scrofa_tibetan	ENSSSCP00015042005	100	100
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	92.8934	91.8782	sus_scrofa_usmarc	ENSSSCP00070021543	81.6964	80.8036
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	96.4467	92.8934	ovis_aries_rambouillet	ENSOARP00020010861	95.4774	91.9598
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	96.4467	94.4162	bos_taurus	ENSBTAP00000025096	95.4774	93.4673
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	88.3249	85.2792	sus_scrofa_wuzhishan	ENSSSCP00005045130	75.6522	73.0435
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	98.9848	98.9848	sus_scrofa_meishan	ENSSSCP00040037084	98.4848	98.4848
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	98.9848	98.9848	sus_scrofa_bamei	ENSSSCP00050029209	98.4848	98.4848
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	98.9848	98.9848	sus_scrofa_jinhua	ENSSSCP00060030797	98.4848	98.4848
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	98.9848	98.9848	sus_scrofa_landrace	ENSSSCP00045037234	98.4848	98.4848
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	100	100	sus_scrofa_hampshire	ENSSSCP00035031904	100	100
ENSSSCG00055015989	sus_scrofa_pietrain	ENSSSCP00055025086	98.9848	98.9848	sus_scrofa_rongchang	ENSSSCP00030021680	98.4848	98.4848

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression