RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055015581	Gene ID		Accession	-
Symbol	C5orf34	Alias	-	Full Name	NA
Status	Confidence	Length	44399 bases	Strand	Minus strand
Position	LUXU01080480.1 : 118450 - 162848	RNA binding domain	PAM2 , MIF4G
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055024909	PAM2	PF07145	5.6e-05	1
ENSSSCP00055024909	MIF4G	PF02854	2.7e-38	2
ENSSSCP00055024573	PAM2	PF07145	6.1e-05	1
ENSSSCP00055024573	MIF4G	PF02854	2.9e-38	2
ENSSSCP00055024732	PAM2	PF07145	6.1e-05	1
ENSSSCP00055024732	MIF4G	PF02854	2.9e-38	2
ENSSSCP00055024851	PAM2	PF07145	6.2e-05	1
ENSSSCP00055024851	MIF4G	PF02854	1.6e-34	2
ENSSSCP00055024795	PAM2	PF07145	6.4e-05	1
ENSSSCP00055024795	MIF4G	PF02854	3.7e-38	2
ENSSSCP00055024679	PAM2	PF07145	8e-05	1
ENSSSCP00055024679	MIF4G	PF02854	5.9e-38	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
C5orf34-201	ENSSSCT00055030858	1364	365aa	ENSSSCP00055024573
C5orf34-202	ENSSSCT00055031004	2539	480aa	ENSSSCP00055024679
C5orf34-203	ENSSSCT00055031064	1595	367aa	ENSSSCP00055024732
C5orf34-204	ENSSSCT00055031139	1531	400aa	ENSSSCP00055024795
C5orf34-205	ENSSSCT00055031203	1501	390aa	ENSSSCP00055024851
C5orf34-206	ENSSSCT00055031283	1204	351aa	ENSSSCP00055024909

Gene Model

Click here to download ENSSSCG00055015581's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055015581's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055011957	25	12.3355	sus_scrofa_pietrain	ENSSSCP00055024679	31.6667	15.625

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	100	100	sus_scrofa_largewhite	ENSSSCP00025046042	100	100
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	100	100	sus_scrofa	ENSSSCP00000043450	100	100
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	98.5417	97.7083	equus_caballus	ENSECAP00000045313	98.5417	97.7083
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	100	100	sus_scrofa_berkshire	ENSSSCP00065018367	100	100
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	100	100	sus_scrofa_tibetan	ENSSSCP00015013596	100	100
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	97.9167	97.0833	ovis_aries_rambouillet	ENSOARP00020007476	97.1074	96.281
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	79.1667	77.9167	ovis_aries_rambouillet	ENSOARP00020008482	97.1867	95.6522
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	81.6667	80.8333	bos_taurus	ENSBTAP00000027160	98	97
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	50.2083	46.875	bos_taurus	ENSBTAP00000054878	90.2622	84.2697
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	81.25	81.25	sus_scrofa_wuzhishan	ENSSSCP00005021621	81.4196	81.4196
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	100	100	sus_scrofa_meishan	ENSSSCP00040030899	100	100
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	100	100	sus_scrofa_bamei	ENSSSCP00050010901	100	100
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	100	100	sus_scrofa_jinhua	ENSSSCP00060019544	100	100
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	100	100	sus_scrofa_landrace	ENSSSCP00045012170	100	100
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	100	100	sus_scrofa_hampshire	ENSSSCP00035039276	100	100
ENSSSCG00055015581	sus_scrofa_pietrain	ENSSSCP00055024679	100	100	sus_scrofa_rongchang	ENSSSCP00030038754	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression