RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSSCG00055013536	Gene ID	100737040	Accession	-
Symbol		Alias	-	Full Name	RNA polymerase II subunit A
Status	Confidence	Length	30343 bases	Strand	Plus strand
Position	LUXU01019018.1 : 524616 - 554958	RNA binding domain	RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3 , RNA_pol_Rpb1_R , RNA_pol_Rpb1_6 , RNA_pol_Rpb1_7
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055021233	RNA_pol_Rpb1_4	PF05000	7.3e-38	1
ENSSSCP00055021233	RNA_pol_Rpb1_1	PF04997	1.1e-108	2
ENSSSCP00055021233	RNA_pol_Rpb1_5	PF04998	3.1e-100	3
ENSSSCP00055021233	RNA_pol_Rpb1_2	PF00623	2.4e-74	4
ENSSSCP00055021233	RNA_pol_Rpb1_3	PF04983	1.7e-49	5
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	6
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	7
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	8
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	9
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	10
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	11
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	12
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	13
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	14
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	15
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	16
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	17
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	18
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	19
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	20
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	21
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	22
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	23
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	24
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	25
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	26
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	27
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	28
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	29
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	30
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	31
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	32
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	33
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	34
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	35
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	36
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	37
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	38
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	39
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	40
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	41
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	42
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	43
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	44
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	45
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	46
ENSSSCP00055021233	RNA_pol_Rpb1_R	PF05001	4.7e-28	47
ENSSSCP00055021233	RNA_pol_Rpb1_6	PF04992	4.7e-68	48
ENSSSCP00055021233	RNA_pol_Rpb1_7	PF04990	4e-54	49

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00055026705	6824	1970aa	ENSSSCP00055021233

Gene Model

Click here to download ENSSSCG00055013536's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055013536's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055046879	53.495	34.7361	sus_scrofa_pietrain	ENSSSCP00055021233	38.0711	24.7208
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055031152	41.1389	25.276	sus_scrofa_pietrain	ENSSSCP00055021233	35.9391	22.0812

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	95.3807	94.4162	sus_scrofa_largewhite	ENSSSCP00025040164	94.4221	93.4673
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	99.6954	99.6954	sus_scrofa	ENSSSCP00000024326	99.7967	99.7967
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	98.3756	98.2234	equus_caballus	ENSECAP00000057709	99.5889	99.4347
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	100	100	sus_scrofa_berkshire	ENSSSCP00065033026	100	100
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	97.4619	97.4112	sus_scrofa_tibetan	ENSSSCP00015023396	97.166	97.1154
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	97.5635	97.5635	sus_scrofa_usmarc	ENSSSCP00070036079	98.5641	98.5641
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	99.797	99.7462	ovis_aries_rambouillet	ENSOARP00020017833	99.797	99.7462
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	99.797	99.7462	bos_taurus	ENSBTAP00000065848	99.797	99.7462
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	92.9442	92.5888	sus_scrofa_wuzhishan	ENSSSCP00005043646	97.5493	97.1763
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	99.797	99.797	sus_scrofa_meishan	ENSSSCP00040010721	99.797	99.797
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	98.1726	98.1726	sus_scrofa_bamei	ENSSSCP00050003478	98.7238	98.7238
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	98.1726	98.1726	sus_scrofa_jinhua	ENSSSCP00060027889	98.7238	98.7238
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	100	100	sus_scrofa_landrace	ENSSSCP00045037796	100	100
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	98.2234	98.2234	sus_scrofa_hampshire	ENSSSCP00035029604	100	100
ENSSSCG00055013536	sus_scrofa_pietrain	ENSSSCP00055021233	98.5787	98.5787	sus_scrofa_rongchang	ENSSSCP00030048869	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression