RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055013462	Gene ID		Accession	-
Symbol	CNOT7	Alias	-	Full Name	NA
Status	Confidence	Length	23419 bases	Strand	Plus strand
Position	LUXU01048777.1 : 2050744 - 2074162	RNA binding domain	CAF1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055021149	CAF1	PF04857	5e-22	1
ENSSSCP00055021149	CAF1	PF04857	5e-22	2
ENSSSCP00055021071	CAF1	PF04857	7.4e-22	1
ENSSSCP00055021071	CAF1	PF04857	7.4e-22	2
ENSSSCP00055021133	CAF1	PF04857	7.4e-22	1
ENSSSCP00055021133	CAF1	PF04857	7.4e-22	2
ENSSSCP00055021205	CAF1	PF04857	7.4e-22	1
ENSSSCP00055021205	CAF1	PF04857	7.4e-22	2
ENSSSCP00055021035	CAF1	PF04857	1.9e-19	1
ENSSSCP00055021104	CAF1	PF04857	1.3e-14	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
CNOT7-201	ENSSSCT00055026471	1582	231aa	ENSSSCP00055021035
CNOT7-202	ENSSSCT00055026513	2673	285aa	ENSSSCP00055021071
CNOT7-203	ENSSSCT00055026554	2420	279aa	ENSSSCP00055021104
CNOT7-204	ENSSSCT00055026588	2574	285aa	ENSSSCP00055021133
CNOT7-206	ENSSSCT00055026608	880	261aa	ENSSSCP00055021149
CNOT7-205	ENSSSCT00055026669	3765	285aa	ENSSSCP00055021205

Gene Model

Click here to download ENSSSCG00055013462's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055013462's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055045050	86.6438	73.6301	sus_scrofa_pietrain	ENSSSCP00055021205	88.7719	75.4386

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	88.7719	87.3684	sus_scrofa_largewhite	ENSSSCP00025048090	90.681	89.2473
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	100	100	sus_scrofa	ENSSSCP00000039703	100	100
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	87.3684	86.3158	equus_caballus	ENSECAP00000004072	90.2174	89.1304
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	88.7719	87.3684	sus_scrofa_berkshire	ENSSSCP00065012380	90.681	89.2473
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	100	100	sus_scrofa_tibetan	ENSSSCP00015037418	100	100
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	100	100	sus_scrofa_usmarc	ENSSSCP00070021329	100	100
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	100	99.6491	ovis_aries_rambouillet	ENSOARP00020029588	100	99.6491
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	100	99.6491	bos_taurus	ENSBTAP00000024009	100	99.6491
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	100	100	sus_scrofa_wuzhishan	ENSSSCP00005019843	100	100
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	100	100	sus_scrofa_meishan	ENSSSCP00040002091	100	100
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	88.7719	87.3684	sus_scrofa_bamei	ENSSSCP00050001513	90.681	89.2473
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	88.7719	87.3684	sus_scrofa_jinhua	ENSSSCP00060026327	90.681	89.2473
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	100	100	sus_scrofa_landrace	ENSSSCP00045041711	100	100
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	88.7719	87.3684	sus_scrofa_hampshire	ENSSSCP00035039701	90.681	89.2473
ENSSSCG00055013462	sus_scrofa_pietrain	ENSSSCP00055021205	88.7719	87.3684	sus_scrofa_rongchang	ENSSSCP00030027853	90.681	89.2473

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression