RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00055012182	Gene ID	100037939	Accession	-
Symbol	APOBEC3B	Alias	-	Full Name	apolipoprotein B mRNA editing enzyme catalytic subunit 3B
Status	Confidence	Length	18310 bases	Strand	Minus strand
Position	LUXU01023965.1 : 2275750 - 2294059	RNA binding domain	APOBEC_N , APOBEC_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055018929	APOBEC_N	PF08210	1e-93	1
ENSSSCP00055018929	APOBEC_N	PF08210	1e-93	2
ENSSSCP00055018929	APOBEC_C	PF05240	1.4e-60	3
ENSSSCP00055018929	APOBEC_C	PF05240	1.4e-60	4
ENSSSCP00055019179	APOBEC_N	PF08210	3.7e-51	1
ENSSSCP00055019179	APOBEC_C	PF05240	9e-32	2
ENSSSCP00055019137	APOBEC_N	PF08210	4e-51	1
ENSSSCP00055019137	APOBEC_C	PF05240	9.8e-32	2
ENSSSCP00055019034	APOBEC_N	PF08210	1.9e-44	1
ENSSSCP00055019034	APOBEC_C	PF05240	1.9e-27	2
ENSSSCP00055019073	APOBEC_N	PF08210	6.6e-43	1
ENSSSCP00055019073	APOBEC_C	PF05240	1.5e-27	2
ENSSSCP00055019216	APOBEC_N	PF08210	4.4e-42	1
ENSSSCP00055019216	APOBEC_C	PF05240	1.1e-31	2
ENSSSCP00055018973	APOBEC_N	PF08210	1.5e-37	1
ENSSSCP00055018973	APOBEC_C	PF05240	9.2e-28	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
APOBEC3B-201	ENSSSCT00055023918	2645	418aa	ENSSSCP00055018929
APOBEC3B-202	ENSSSCT00055023963	1835	206aa	ENSSSCP00055018973
APOBEC3B-203	ENSSSCT00055024028	1360	271aa	ENSSSCP00055019034
APOBEC3B-204	ENSSSCT00055024077	1973	244aa	ENSSSCP00055019073
APOBEC3B-205	ENSSSCT00055024148	1826	280aa	ENSSSCP00055019137
APOBEC3B-206	ENSSSCT00055024195	900	268aa	ENSSSCP00055019179
APOBEC3B-207	ENSSSCT00055024234	1394	297aa	ENSSSCP00055019216

Gene Model

Click here to download ENSSSCG00055012182's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055012182's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055025184	36.5019	19.7719	sus_scrofa_pietrain	ENSSSCP00055018929	22.9665	12.4402
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055025086	57.3604	36.5482	sus_scrofa_pietrain	ENSSSCP00055018929	27.0335	17.2249
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055019876	42.4107	24.5536	sus_scrofa_pietrain	ENSSSCP00055018929	22.7273	13.1579

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	100	100	sus_scrofa_largewhite	ENSSSCP00025003097	100	100
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	44.0191	43.5407	sus_scrofa	ENSSSCP00000049864	75.7202	74.8971
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	37.5598	29.9043	equus_caballus	ENSECAP00000034895	63.3064	50.4032
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	100	100	sus_scrofa_berkshire	ENSSSCP00065010706	100	100
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	85.8852	83.7321	sus_scrofa_tibetan	ENSSSCP00015019326	62.8722	61.296
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	99.2823	99.2823	sus_scrofa_usmarc	ENSSSCP00070045450	99.7596	99.7596
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	64.8325	53.5885	ovis_aries_rambouillet	ENSOARP00020015068	72.8495	60.2151
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	66.9856	53.8278	bos_taurus	ENSBTAP00000003115	72.7273	58.4416
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	94.2584	93.0622	sus_scrofa_wuzhishan	ENSSSCP00005009898	86.0262	84.9345
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	86.1244	83.7321	sus_scrofa_meishan	ENSSSCP00040030766	63.0473	61.296
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	85.8852	83.4928	sus_scrofa_bamei	ENSSSCP00050046215	62.8722	61.1208
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	99.2823	99.2823	sus_scrofa_jinhua	ENSSSCP00060026447	99.2823	99.2823
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	85.6459	83.4928	sus_scrofa_landrace	ENSSSCP00045037601	62.697	61.1208
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	99.0431	99.0431	sus_scrofa_hampshire	ENSSSCP00035017128	99.0431	99.0431
ENSSSCG00055012182	sus_scrofa_pietrain	ENSSSCP00055018929	99.0431	99.0431	sus_scrofa_rongchang	ENSSSCP00030002890	99.0431	99.0431

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression